HL_8Y5P_032

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8Y5P|1|1|U|1325, 8Y5P|1|1|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_032 not in the Motif Atlas

Geometric match to HL_5J7L_166

Geometric discrepancy: 0.1916

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8Y5P|1|1|G|1324
8Y5P|1|1|U|1325
8Y5P|1|1|U|1326
8Y5P|1|1|A|1327
8Y5P|1|1|A|1328
8Y5P|1|1|U|1329
8Y5P|1|1|C|1330

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22