HL_8Y5P_049

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8Y5P|1|1|A|2030, 8Y5P|1|1|A|2031, 8Y5P|1|1|G|2032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_049 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.2317

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y5P|1|1|G|2027
8Y5P|1|1|U|2028
8Y5P|1|1|G|2029
8Y5P|1|1|A|2030
8Y5P|1|1|A|2031
8Y5P|1|1|G|2032
8Y5P|1|1|A|2033
8Y5P|1|1|U|2034
8Y5P|1|1|G|2035
8Y5P|1|1|C|2036

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3