HL_8Y5P_062

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_062 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.1318

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Y5P|1|1|C|2594
8Y5P|1|1|G|2595
8Y5P|1|1|U|2596
8Y5P|1|1|G|2597
8Y5P|1|1|A|2598
8Y5P|1|1|G|2599

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2