HL_8Y5P_096

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8Y5P|1|3|U|1168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_096 not in the Motif Atlas

Geometric match to HL_4LFB_012

Geometric discrepancy: 0.3113

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Y5P|1|3|U|1165
8Y5P|1|3|G|1166
8Y5P|1|3|A|1167
8Y5P|1|3|U|1168
8Y5P|1|3|A|1169
8Y5P|1|3|A|1170
8Y5P|1|3|A|1171

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain Z

30S ribosomal protein S21