HL_8Y5P_103

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_103 not in the Motif Atlas

Geometric match to HL_4TUE_034

Geometric discrepancy: 0.2102

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8Y5P|1|6|G|31
8Y5P|1|6|C|32
8Y5P|1|6|U|33
8Y5P|1|6|C|34
8Y5P|1|6|A|35
8Y5P|1|6|U|36
8Y5P|1|6|A|37
8Y5P|1|6|A|38
8Y5P|1|6|C|39

Current chains

Chain 6

tRNA(fMet)

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 4

mRNA

Chain N

30S ribosomal protein S9