HL_8Y5Q_012

3D structure

PDB id

8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8Y5Q|1|1|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5Q_012 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.1567

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y5Q|1|1|G|410
8Y5Q|1|1|G|411
8Y5Q|1|1|A|412
8Y5Q|1|1|C|413
8Y5Q|1|1|C|414
8Y5Q|1|1|A|415
8Y5Q|1|1|U|416
8Y5Q|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains