HL_8Y5Q_077
3D structure
- PDB id
- 8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y5Q_077 not in the Motif Atlas
- Geometric match to HL_8HZL_002
- Geometric discrepancy: 0.1639
- The information below is about HL_8HZL_002
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 397
Unit IDs
8Y5Q|1|3|U|296
8Y5Q|1|3|G|297
8Y5Q|1|3|A|298
8Y5Q|1|3|G|299
8Y5Q|1|3|A|300
8Y5Q|1|3|G|301
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain J
- 30S ribosomal protein S5
- Chain M
- 30S ribosomal protein S8
- Chain Q
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
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