HL_8Y5R_017

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8Y5R|1|1|A|613, 8Y5R|1|1|U|615

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5R_017 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.1369

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8Y5R|1|1|C|611
8Y5R|1|1|G|612
8Y5R|1|1|A|613
8Y5R|1|1|A|614
8Y5R|1|1|U|615
8Y5R|1|1|A|616
8Y5R|1|1|G|617

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4