8Y5R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5R_001 | Pseudoknot geometry | ||
| HL_8Y5R_002 | No text annotation | ||
| HL_8Y5R_003 | No text annotation | ||
| HL_8Y5R_004 | No text annotation | ||
| HL_8Y5R_005 | No text annotation | ||
| HL_8Y5R_006 | No text annotation | ||
| HL_8Y5R_007 | No text annotation | ||
| HL_8Y5R_008 | No text annotation | ||
| HL_8Y5R_009 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5R_010 | T-loop with unstacked turn | ||
| HL_8Y5R_011 | No text annotation | ||
| HL_8Y5R_012 | Pseudoknot geometry | ||
| HL_8Y5R_013 | GNRA | ||
| HL_8Y5R_014 | GNRA | ||
| HL_8Y5R_015 | No text annotation | ||
| HL_8Y5R_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5R_017 | No text annotation | ||
| HL_8Y5R_018 | GNRA | ||
| HL_8Y5R_019 | No text annotation | ||
| HL_8Y5R_020 | GNRA wlth tandem sheared | ||
| HL_8Y5R_021 | No text annotation | ||
| HL_8Y5R_022 | UNCG variation | ||
| HL_8Y5R_023 | No text annotation | ||
| HL_8Y5R_024 | No text annotation | ||
| HL_8Y5R_025 | GNRA | ||
| HL_8Y5R_026 | No text annotation | ||
| HL_8Y5R_027 | No text annotation | ||
| HL_8Y5R_028 | GNRA wlth tandem sheared | ||
| HL_8Y5R_029 | No text annotation | ||
| HL_8Y5R_030 | GNRA | ||
| HL_8Y5R_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5R_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5R_033 | GNRA | ||
| HL_8Y5R_034 | No text annotation | ||
| HL_8Y5R_035 | Mini UNCG with extended bulge | ||
| HL_8Y5R_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5R_037 | UNCG | ||
| HL_8Y5R_038 | Mini UNCG | ||
| HL_8Y5R_039 | No text annotation | ||
| HL_8Y5R_040 | GNRA | ||
| HL_8Y5R_041 | UNCG | ||
| HL_8Y5R_042 | No text annotation | ||
| HL_8Y5R_043 | No text annotation | ||
| HL_8Y5R_044 | No text annotation | ||
| HL_8Y5R_045 | GNRA related | ||
| HL_8Y5R_046 | No text annotation | ||
| HL_8Y5R_047 | No text annotation | ||
| HL_8Y5R_048 | No text annotation | ||
| HL_8Y5R_049 | No text annotation | ||
| HL_8Y5R_050 | No text annotation | ||
| HL_8Y5R_051 | No text annotation | ||
| HL_8Y5R_052 | No text annotation | ||
| HL_8Y5R_053 | No text annotation | ||
| HL_8Y5R_054 | No text annotation | ||
| HL_8Y5R_055 | Pseudoknot geometry | ||
| HL_8Y5R_056 | GNRA | ||
| HL_8Y5R_057 | GNRA | ||
| HL_8Y5R_058 | No text annotation | ||
| HL_8Y5R_059 | No text annotation | ||
| HL_8Y5R_060 | GNRA variation | ||
| HL_8Y5R_061 | No text annotation | ||
| HL_8Y5R_062 | GNRA | ||
| HL_8Y5R_063 | GNRA | ||
| HL_8Y5R_064 | Ribsomal LSU H95 | ||
| HL_8Y5R_065 | No text annotation | ||
| HL_8Y5R_066 | UNCG variation | ||
| HL_8Y5R_067 | No text annotation | ||
| HL_8Y5R_068 | GNRA | ||
| HL_8Y5R_069 | No text annotation | ||
| HL_8Y5R_070 | No text annotation | ||
| HL_8Y5R_071 | Mini UNCG | ||
| HL_8Y5R_072 | No text annotation | ||
| HL_8Y5R_073 | No text annotation | ||
| HL_8Y5R_074 | GNRA | ||
| HL_8Y5R_075 | GNRA | ||
| HL_8Y5R_076 | No text annotation | ||
| HL_8Y5R_077 | GNRA related | ||
| HL_8Y5R_078 | GNRA | ||
| HL_8Y5R_079 | No text annotation | ||
| HL_8Y5R_080 | UNCG | ||
| HL_8Y5R_081 | GNRA | ||
| HL_8Y5R_082 | UNCG | ||
| HL_8Y5R_083 | GNRA wlth extra near cWW | ||
| HL_8Y5R_084 | GNRA variation | ||
| HL_8Y5R_085 | GNRA-like with tWH | ||
| HL_8Y5R_086 | No text annotation | ||
| HL_8Y5R_087 | GNRA | ||
| HL_8Y5R_088 | No text annotation | ||
| HL_8Y5R_089 | No text annotation | ||
| HL_8Y5R_090 | GNRA | ||
| HL_8Y5R_091 | GNRA | ||
| HL_8Y5R_092 | No text annotation | ||
| HL_8Y5R_093 | GNRA | ||
| HL_8Y5R_094 | GNRA | ||
| HL_8Y5R_095 | T-loop related | ||
| HL_8Y5R_096 | No text annotation | ||
| HL_8Y5R_097 | GNRA | ||
| HL_8Y5R_098 | GNRA | ||
| HL_8Y5R_099 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5R_100 | No text annotation | ||
| HL_8Y5R_101 | No text annotation | ||
| HL_8Y5R_102 | GNRA | ||
| HL_8Y5R_103 | No text annotation | ||
| HL_8Y5R_104 | No text annotation | ||
| HL_8Y5R_105 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5R_106 | No text annotation | ||
| HL_8Y5R_107 | No text annotation | ||
| HL_8Y5R_108 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5R_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5R_002 | Single bulged A | ||
| IL_8Y5R_003 | Minor groove platform | ||
| IL_8Y5R_004 | No text annotation | ||
| IL_8Y5R_005 | Single stack bend | ||
| IL_8Y5R_006 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5R_007 | No text annotation | ||
| IL_8Y5R_008 | No text annotation | ||
| IL_8Y5R_009 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_010 | No text annotation | ||
| IL_8Y5R_011 | No text annotation | ||
| IL_8Y5R_012 | Double sheared | ||
| IL_8Y5R_013 | AAA cross-strand stack | ||
| IL_8Y5R_014 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_015 | tHW-tHW cross-strand stack | ||
| IL_8Y5R_016 | Single bulged A | ||
| IL_8Y5R_017 | Single bulged G | ||
| IL_8Y5R_018 | Triple sheared | ||
| IL_8Y5R_019 | Major groove platform | ||
| IL_8Y5R_020 | Multiple bulged bases | ||
| IL_8Y5R_021 | No text annotation | ||
| IL_8Y5R_022 | No text annotation | ||
| IL_8Y5R_023 | Stack outside cWW | ||
| IL_8Y5R_024 | Single stack bend | ||
| IL_8Y5R_025 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5R_026 | Single bulged G | ||
| IL_8Y5R_027 | C-loop with bulged stacked A's | ||
| IL_8Y5R_028 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_029 | Double sheared with non-canonical cWW | ||
| IL_8Y5R_030 | No text annotation | ||
| IL_8Y5R_031 | Single bulged C | ||
| IL_8Y5R_032 | UAA/GAN | ||
| IL_8Y5R_033 | SSU/LSU pseudoknot | ||
| IL_8Y5R_034 | Single bulged U | ||
| IL_8Y5R_035 | Kink-turn related | ||
| IL_8Y5R_036 | No text annotation | ||
| IL_8Y5R_037 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_038 | Tandem non-canonical cWW pairs | ||
| IL_8Y5R_039 | Kink-turn | ||
| IL_8Y5R_040 | No text annotation | ||
| IL_8Y5R_041 | Major groove platform | ||
| IL_8Y5R_042 | Isolated cWS basepair | ||
| IL_8Y5R_043 | No text annotation | ||
| IL_8Y5R_044 | Kink-turn | ||
| IL_8Y5R_045 | C-loop | ||
| IL_8Y5R_046 | UAA/GAN | ||
| IL_8Y5R_047 | tSH-tHW-tHS | ||
| IL_8Y5R_048 | No text annotation | ||
| IL_8Y5R_049 | UAA/GAN | ||
| IL_8Y5R_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5R_051 | tSH-tHW | ||
| IL_8Y5R_052 | Single bulged U | ||
| IL_8Y5R_053 | No text annotation | ||
| IL_8Y5R_054 | tSH-tHW-tHS | ||
| IL_8Y5R_055 | 180 degree turn | ||
| IL_8Y5R_056 | Single bulged A | ||
| IL_8Y5R_057 | UAA/GAN variation | ||
| IL_8Y5R_058 | No text annotation | ||
| IL_8Y5R_059 | Isolated tWW turn | ||
| IL_8Y5R_060 | No text annotation | ||
| IL_8Y5R_061 | tSH-tSH-tHH-tHS | ||
| IL_8Y5R_062 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5R_063 | Triple sheared | ||
| IL_8Y5R_064 | Single bulged A | ||
| IL_8Y5R_065 | Kink-turn related | ||
| IL_8Y5R_066 | Minor groove platform, major groove intercalation | ||
| IL_8Y5R_067 | Major groove intercalation | ||
| IL_8Y5R_068 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5R_069 | No text annotation | ||
| IL_8Y5R_070 | UAA/GAN related | ||
| IL_8Y5R_071 | No text annotation | ||
| IL_8Y5R_072 | Major groove platform | ||
| IL_8Y5R_073 | No text annotation | ||
| IL_8Y5R_074 | Single bulged U | ||
| IL_8Y5R_075 | Minor groove platform | ||
| IL_8Y5R_076 | Isolated tHS basepair with bulges | ||
| IL_8Y5R_077 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_078 | No text annotation | ||
| IL_8Y5R_079 | No text annotation | ||
| IL_8Y5R_080 | No text annotation | ||
| IL_8Y5R_081 | Single bulged U | ||
| IL_8Y5R_082 | Double sheared | ||
| IL_8Y5R_083 | No text annotation | ||
| IL_8Y5R_084 | Single stack bend | ||
| IL_8Y5R_085 | Major groove platform | ||
| IL_8Y5R_086 | No text annotation | ||
| IL_8Y5R_087 | Double sheared with non-canonical cWW | ||
| IL_8Y5R_088 | Major groove platform | ||
| IL_8Y5R_089 | Isolated non-canonical cWW with bulges | ||
| IL_8Y5R_090 | No text annotation | ||
| IL_8Y5R_091 | Major groove platform with intercalation | ||
| IL_8Y5R_092 | Single bulged A | ||
| IL_8Y5R_093 | tSH-tHS-tHW | ||
| IL_8Y5R_094 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5R_095 | C-loop | ||
| IL_8Y5R_096 | UAA/GAN related, with intercalation | ||
| IL_8Y5R_097 | Multiple bulged bases | ||
| IL_8Y5R_098 | UAA/GAN with extra cWW | ||
| IL_8Y5R_099 | No text annotation | ||
| IL_8Y5R_100 | Major groove intercalation | ||
| IL_8Y5R_101 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5R_102 | tHS double platform | ||
| IL_8Y5R_103 | Major groove intercalation | ||
| IL_8Y5R_104 | No text annotation | ||
| IL_8Y5R_105 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5R_106 | Symmetric double minor groove platform | ||
| IL_8Y5R_107 | Bacterial 5S Loop E | ||
| IL_8Y5R_108 | Single bulged G | ||
| IL_8Y5R_109 | Single bulged A | ||
| IL_8Y5R_110 | No text annotation | ||
| IL_8Y5R_111 | Minor groove platform | ||
| IL_8Y5R_112 | Multiple bulged bases | ||
| IL_8Y5R_113 | Minor groove platform with extra cWW | ||
| IL_8Y5R_114 | Minor groove platform | ||
| IL_8Y5R_115 | No text annotation | ||
| IL_8Y5R_116 | No text annotation | ||
| IL_8Y5R_117 | No text annotation | ||
| IL_8Y5R_118 | Isolated cWH basepair | ||
| IL_8Y5R_119 | tWH-tWH-tHW-tHW | ||
| IL_8Y5R_120 | Minor groove platform | ||
| IL_8Y5R_121 | Kink-turn with non-sequential stacking | ||
| IL_8Y5R_122 | No text annotation | ||
| IL_8Y5R_123 | C-loop | ||
| IL_8Y5R_124 | Single bulged U | ||
| IL_8Y5R_125 | C-loop | ||
| IL_8Y5R_126 | Single bulged G | ||
| IL_8Y5R_127 | No text annotation | ||
| IL_8Y5R_128 | No text annotation | ||
| IL_8Y5R_129 | tSH-tHW-tWW | ||
| IL_8Y5R_130 | No text annotation | ||
| IL_8Y5R_131 | SSU/LSU pseudoknot | ||
| IL_8Y5R_132 | No text annotation | ||
| IL_8Y5R_133 | No text annotation | ||
| IL_8Y5R_134 | tSH-tHW-tHS | ||
| IL_8Y5R_135 | Major groove platform | ||
| IL_8Y5R_136 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5R_137 | No text annotation | ||
| IL_8Y5R_138 | Major groove platform; stack outside cWW | ||
| IL_8Y5R_139 | Single stack bend | ||
| IL_8Y5R_140 | Tandem non-canonical cWW pairs | ||
| IL_8Y5R_141 | Triple non-canonical cWW pairs | ||
| IL_8Y5R_142 | Kink-turn | ||
| IL_8Y5R_143 | Left turn | ||
| IL_8Y5R_144 | tSH-tHW-tHS | ||
| IL_8Y5R_145 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5R_146 | Single bulged A | ||
| IL_8Y5R_147 | Single bulged G | ||
| IL_8Y5R_148 | Minor groove platform | ||
| IL_8Y5R_149 | Minor groove platform | ||
| IL_8Y5R_150 | Minor groove platform | ||
| IL_8Y5R_151 | Single stack bend | ||
| IL_8Y5R_152 | No text annotation | ||
| IL_8Y5R_153 | Single bulged U | ||
| IL_8Y5R_154 | Isolated cWS basepair | ||
| IL_8Y5R_155 | Minor groove platform | ||
| IL_8Y5R_156 | Single bulged A | ||
| IL_8Y5R_157 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_158 | No text annotation | ||
| IL_8Y5R_159 | Minor groove platform | ||
| IL_8Y5R_160 | No text annotation | ||
| IL_8Y5R_161 | No text annotation | ||
| IL_8Y5R_162 | 180 degree turn | ||
| IL_8Y5R_163 | Double sheared with non-canonical cWW | ||
| IL_8Y5R_164 | No text annotation | ||
| IL_8Y5R_165 | No text annotation | ||
| IL_8Y5R_166 | No text annotation | ||
| IL_8Y5R_167 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_168 | No text annotation | ||
| IL_8Y5R_169 | Isolated non-canonical cWW pair | ||
| IL_8Y5R_170 | Double sheared | ||
| IL_8Y5R_171 | Triple sheared related | ||
| IL_8Y5R_172 | Single bulged A | ||
| IL_8Y5R_173 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5R_001 | No text annotation | ||
| J3_8Y5R_002 | No text annotation | ||
| J3_8Y5R_003 | No text annotation | ||
| J3_8Y5R_004 | No text annotation | ||
| J3_8Y5R_005 | No text annotation | ||
| J3_8Y5R_006 | No text annotation | ||
| J3_8Y5R_007 | No text annotation | ||
| J3_8Y5R_008 | No text annotation | ||
| J3_8Y5R_009 | No text annotation | ||
| J3_8Y5R_010 | No text annotation | ||
| J3_8Y5R_011 | No text annotation | ||
| J3_8Y5R_012 | No text annotation | ||
| J3_8Y5R_013 | Kink-turn 3-way junction | ||
| J3_8Y5R_014 | No text annotation | ||
| J3_8Y5R_015 | No text annotation | ||
| J3_8Y5R_016 | No text annotation | ||
| J3_8Y5R_017 | No text annotation | ||
| J3_8Y5R_018 | No text annotation | ||
| J3_8Y5R_019 | No text annotation | ||
| J3_8Y5R_020 | No text annotation | ||
| J3_8Y5R_021 | No text annotation | ||
| J3_8Y5R_022 | No text annotation | ||
| J3_8Y5R_023 | No text annotation | ||
| J3_8Y5R_024 | No text annotation | ||
| J3_8Y5R_025 | No text annotation | ||
| J3_8Y5R_026 | No text annotation | ||
| J3_8Y5R_027 | No text annotation | ||
| J3_8Y5R_028 | No text annotation | ||
| J3_8Y5R_029 | No text annotation | ||
| J3_8Y5R_030 | No text annotation | ||
| J3_8Y5R_031 | No text annotation | ||
| J3_8Y5R_032 | No text annotation | ||
| J3_8Y5R_033 | No text annotation | ||
| J3_8Y5R_034 | No text annotation | ||
| J3_8Y5R_035 | No text annotation | ||
| J4_8Y5R_001 | No text annotation | ||
| J4_8Y5R_002 | No text annotation | ||
| J4_8Y5R_003 | No text annotation | ||
| J4_8Y5R_004 | No text annotation | ||
| J4_8Y5R_005 | No text annotation | ||
| J4_8Y5R_006 | No text annotation | ||
| J4_8Y5R_007 | No text annotation | ||
| J4_8Y5R_008 | No text annotation | ||
| J4_8Y5R_009 | No text annotation | ||
| J4_8Y5R_010 | No text annotation | ||
| J4_8Y5R_011 | No text annotation | ||
| J4_8Y5R_012 | No text annotation | ||
| J4_8Y5R_013 | No text annotation | ||
| J4_8Y5R_014 | No text annotation | ||
| J5_8Y5R_001 | No text annotation | ||
| J5_8Y5R_002 | No text annotation | ||
| J5_8Y5R_003 | No text annotation | ||
| J5_8Y5R_004 | No text annotation | ||
| J5_8Y5R_005 | No text annotation | ||
| J5_8Y5R_006 | No text annotation | ||
| J5_8Y5R_007 | No text annotation | ||
| J5_8Y5R_008 | No text annotation | ||
| J5_8Y5R_009 | No text annotation | ||
| J6_8Y5R_001 | No text annotation | ||
| J6_8Y5R_002 | No text annotation | ||
| J7_8Y5R_001 | No text annotation | ||
| J7_8Y5R_002 | No text annotation |
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