HL_8Y5R_025
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGCUAACG
- Length
- 8 nucleotides
- Bulged bases
- 8Y5R|1|1|U|958, 8Y5R|1|1|C|961
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y5R_025 not in the Motif Atlas
- Geometric match to HL_9DFE_025
- Geometric discrepancy: 0.1343
- The information below is about HL_9DFE_025
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
8Y5R|1|1|U|955
8Y5R|1|1|G|956
8Y5R|1|1|C|957
8Y5R|1|1|U|958
8Y5R|1|1|A|959
8Y5R|1|1|A|960
8Y5R|1|1|C|961
8Y5R|1|1|G|962
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 50S ribosomal protein L16
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