HL_8Y5R_069
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8Y5R|1|2|G|41
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y5R_069 not in the Motif Atlas
- Geometric match to HL_5J7L_215
- Geometric discrepancy: 0.1331
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8Y5R|1|2|A|34
8Y5R|1|2|C|35
8Y5R|1|2|C|36
8Y5R|1|2|C|37
8Y5R|1|2|C|38
8Y5R|1|2|A|39
8Y5R|1|2|U|40
8Y5R|1|2|G|41
8Y5R|1|2|C|42
8Y5R|1|2|C|43
8Y5R|1|2|G|44
8Y5R|1|2|A|45
8Y5R|1|2|A|46
8Y5R|1|2|C|47
8Y5R|1|2|U|48
Current chains
- Chain 2
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- 50S ribosomal protein L31
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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