HL_8Y5R_087

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5R_087 not in the Motif Atlas

Geometric match to HL_8P9A_210

Geometric discrepancy: 0.092

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8Y5R|1|3|C|726
8Y5R|1|3|G|727
8Y5R|1|3|A|728
8Y5R|1|3|A|729
8Y5R|1|3|G|730
8Y5R|1|3|G|731

Current chains

Chain 3

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S15

Chain W

30S ribosomal protein S18

Chain Z

30S ribosomal protein S21