HL_8Y5R_105
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 8Y5R|1|5|C|56, 8Y5R|1|5|G|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y5R_105 not in the Motif Atlas
- Geometric match to HL_1J2B_002
- Geometric discrepancy: 0.3649
- The information below is about HL_1J2B_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8Y5R|1|5|G|53
8Y5R|1|5|U|54
8Y5R|1|5|U|55
8Y5R|1|5|C|56
8Y5R|1|5|G|57
8Y5R|1|5|A|58
8Y5R|1|5|U|59
8Y5R|1|5|U|60
8Y5R|1|5|C|61
Current chains
- Chain 5
- tRNA(Phe)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 50S ribosomal protein L5
- Chain m
- 50S ribosomal protein L16
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