HL_8Y5R_107
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- 8Y5R|1|6|C|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5R|1|6|G|29
8Y5R|1|6|G|30
8Y5R|1|6|G|31
8Y5R|1|6|C|32
8Y5R|1|6|U|33
8Y5R|1|6|C|34
8Y5R|1|6|A|35
8Y5R|1|6|U|36
8Y5R|1|6|A|37
8Y5R|1|6|A|38
8Y5R|1|6|C|39
8Y5R|1|6|C|40
8Y5R|1|6|C|41
Current chains
- Chain 6
- tRNA(fMet)
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S11
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