HL_8Y5R_108

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5R_108 not in the Motif Atlas

Geometric match to HL_2DRA_001

Geometric discrepancy: 0.3216

The information below is about HL_2DRA_001

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8Y5R|1|6|G|53
8Y5R|1|6|U|54
8Y5R|1|6|U|55
8Y5R|1|6|C|56
8Y5R|1|6|A|57
8Y5R|1|6|A|58
8Y5R|1|6|A|59
8Y5R|1|6|U|60
8Y5R|1|6|C|61

Current chains

Chain 6

tRNA(fMet)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA