HL_8Y5S_040

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8Y5S|1|1|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5S_040 not in the Motif Atlas

Geometric match to HL_6VMY_001

Geometric discrepancy: 0.1625

The information below is about HL_6VMY_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8Y5S|1|1|A|1630
8Y5S|1|1|G|1631
8Y5S|1|1|A|1632
8Y5S|1|1|G|1633
8Y5S|1|1|A|1634
8Y5S|1|1|A|1635
8Y5S|1|1|U|1636

Current chains

Chain 1

23S rRNA

Nearby chains