8Y5S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5S_001 | Pseudoknot geometry | ||
| HL_8Y5S_002 | No text annotation | ||
| HL_8Y5S_003 | No text annotation | ||
| HL_8Y5S_004 | No text annotation | ||
| HL_8Y5S_005 | No text annotation | ||
| HL_8Y5S_006 | No text annotation | ||
| HL_8Y5S_007 | No text annotation | ||
| HL_8Y5S_008 | No text annotation | ||
| HL_8Y5S_009 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5S_010 | T-loop with unstacked turn | ||
| HL_8Y5S_011 | No text annotation | ||
| HL_8Y5S_012 | Pseudoknot geometry | ||
| HL_8Y5S_013 | GNRA | ||
| HL_8Y5S_014 | GNRA | ||
| HL_8Y5S_015 | No text annotation | ||
| HL_8Y5S_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5S_017 | No text annotation | ||
| HL_8Y5S_018 | GNRA | ||
| HL_8Y5S_019 | No text annotation | ||
| HL_8Y5S_020 | GNRA wlth tandem sheared | ||
| HL_8Y5S_021 | No text annotation | ||
| HL_8Y5S_022 | UNCG variation | ||
| HL_8Y5S_023 | No text annotation | ||
| HL_8Y5S_024 | No text annotation | ||
| HL_8Y5S_025 | GNRA | ||
| HL_8Y5S_026 | No text annotation | ||
| HL_8Y5S_027 | No text annotation | ||
| HL_8Y5S_028 | GNRA wlth tandem sheared | ||
| HL_8Y5S_029 | No text annotation | ||
| HL_8Y5S_030 | GNRA | ||
| HL_8Y5S_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5S_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5S_033 | GNRA | ||
| HL_8Y5S_034 | No text annotation | ||
| HL_8Y5S_035 | Mini UNCG with extended bulge | ||
| HL_8Y5S_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5S_037 | UNCG | ||
| HL_8Y5S_038 | Mini UNCG | ||
| HL_8Y5S_039 | No text annotation | ||
| HL_8Y5S_040 | GNRA | ||
| HL_8Y5S_041 | UNCG | ||
| HL_8Y5S_042 | No text annotation | ||
| HL_8Y5S_043 | No text annotation | ||
| HL_8Y5S_044 | No text annotation | ||
| HL_8Y5S_045 | GNRA related | ||
| HL_8Y5S_046 | No text annotation | ||
| HL_8Y5S_047 | No text annotation | ||
| HL_8Y5S_048 | No text annotation | ||
| HL_8Y5S_049 | No text annotation | ||
| HL_8Y5S_050 | No text annotation | ||
| HL_8Y5S_051 | No text annotation | ||
| HL_8Y5S_052 | No text annotation | ||
| HL_8Y5S_053 | No text annotation | ||
| HL_8Y5S_054 | No text annotation | ||
| HL_8Y5S_055 | Pseudoknot geometry | ||
| HL_8Y5S_056 | GNRA | ||
| HL_8Y5S_057 | GNRA | ||
| HL_8Y5S_058 | No text annotation | ||
| HL_8Y5S_059 | No text annotation | ||
| HL_8Y5S_060 | GNRA variation | ||
| HL_8Y5S_061 | No text annotation | ||
| HL_8Y5S_062 | GNRA | ||
| HL_8Y5S_063 | GNRA | ||
| HL_8Y5S_064 | Ribsomal LSU H95 | ||
| HL_8Y5S_065 | No text annotation | ||
| HL_8Y5S_066 | UNCG variation | ||
| HL_8Y5S_067 | No text annotation | ||
| HL_8Y5S_068 | GNRA | ||
| HL_8Y5S_069 | No text annotation | ||
| HL_8Y5S_070 | No text annotation | ||
| HL_8Y5S_071 | Mini UNCG | ||
| HL_8Y5S_072 | No text annotation | ||
| HL_8Y5S_073 | No text annotation | ||
| HL_8Y5S_074 | GNRA | ||
| HL_8Y5S_075 | GNRA | ||
| HL_8Y5S_076 | No text annotation | ||
| HL_8Y5S_077 | GNRA related | ||
| HL_8Y5S_078 | GNRA | ||
| HL_8Y5S_079 | No text annotation | ||
| HL_8Y5S_080 | UNCG | ||
| HL_8Y5S_081 | GNRA | ||
| HL_8Y5S_082 | UNCG | ||
| HL_8Y5S_083 | GNRA wlth extra near cWW | ||
| HL_8Y5S_084 | GNRA variation | ||
| HL_8Y5S_085 | GNRA-like with tWH | ||
| HL_8Y5S_086 | No text annotation | ||
| HL_8Y5S_087 | GNRA | ||
| HL_8Y5S_088 | No text annotation | ||
| HL_8Y5S_089 | No text annotation | ||
| HL_8Y5S_090 | GNRA | ||
| HL_8Y5S_091 | GNRA | ||
| HL_8Y5S_092 | No text annotation | ||
| HL_8Y5S_093 | GNRA | ||
| HL_8Y5S_094 | GNRA | ||
| HL_8Y5S_095 | T-loop related | ||
| HL_8Y5S_096 | No text annotation | ||
| HL_8Y5S_097 | GNRA | ||
| HL_8Y5S_098 | GNRA | ||
| HL_8Y5S_099 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5S_100 | No text annotation | ||
| HL_8Y5S_101 | No text annotation | ||
| HL_8Y5S_102 | GNRA | ||
| HL_8Y5S_103 | No text annotation | ||
| HL_8Y5S_104 | No text annotation | ||
| HL_8Y5S_105 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5S_106 | No text annotation | ||
| HL_8Y5S_107 | No text annotation | ||
| HL_8Y5S_108 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5S_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5S_002 | Single bulged A | ||
| IL_8Y5S_003 | Minor groove platform | ||
| IL_8Y5S_004 | No text annotation | ||
| IL_8Y5S_005 | Single stack bend | ||
| IL_8Y5S_006 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5S_007 | No text annotation | ||
| IL_8Y5S_008 | No text annotation | ||
| IL_8Y5S_009 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_010 | No text annotation | ||
| IL_8Y5S_011 | No text annotation | ||
| IL_8Y5S_012 | Double sheared | ||
| IL_8Y5S_013 | AAA cross-strand stack | ||
| IL_8Y5S_014 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_015 | tHW-tHW cross-strand stack | ||
| IL_8Y5S_016 | Single bulged A | ||
| IL_8Y5S_017 | Single bulged G | ||
| IL_8Y5S_018 | Triple sheared | ||
| IL_8Y5S_019 | Major groove platform | ||
| IL_8Y5S_020 | Multiple bulged bases | ||
| IL_8Y5S_021 | No text annotation | ||
| IL_8Y5S_022 | No text annotation | ||
| IL_8Y5S_023 | Stack outside cWW | ||
| IL_8Y5S_024 | Single stack bend | ||
| IL_8Y5S_025 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5S_026 | Single bulged G | ||
| IL_8Y5S_027 | C-loop with bulged stacked A's | ||
| IL_8Y5S_028 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_029 | Double sheared with non-canonical cWW | ||
| IL_8Y5S_030 | No text annotation | ||
| IL_8Y5S_031 | Single bulged C | ||
| IL_8Y5S_032 | UAA/GAN | ||
| IL_8Y5S_033 | SSU/LSU pseudoknot | ||
| IL_8Y5S_034 | Single bulged U | ||
| IL_8Y5S_035 | Kink-turn related | ||
| IL_8Y5S_036 | No text annotation | ||
| IL_8Y5S_037 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_038 | Tandem non-canonical cWW pairs | ||
| IL_8Y5S_039 | Kink-turn | ||
| IL_8Y5S_040 | No text annotation | ||
| IL_8Y5S_041 | Major groove platform | ||
| IL_8Y5S_042 | Isolated cWS basepair | ||
| IL_8Y5S_043 | No text annotation | ||
| IL_8Y5S_044 | Kink-turn | ||
| IL_8Y5S_045 | C-loop | ||
| IL_8Y5S_046 | UAA/GAN | ||
| IL_8Y5S_047 | tSH-tHW-tHS | ||
| IL_8Y5S_048 | No text annotation | ||
| IL_8Y5S_049 | UAA/GAN | ||
| IL_8Y5S_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5S_051 | tSH-tHW | ||
| IL_8Y5S_052 | Single bulged U | ||
| IL_8Y5S_053 | No text annotation | ||
| IL_8Y5S_054 | tSH-tHW-tHS | ||
| IL_8Y5S_055 | 180 degree turn | ||
| IL_8Y5S_056 | Single bulged A | ||
| IL_8Y5S_057 | UAA/GAN variation | ||
| IL_8Y5S_058 | No text annotation | ||
| IL_8Y5S_059 | Isolated tWW turn | ||
| IL_8Y5S_060 | No text annotation | ||
| IL_8Y5S_061 | tSH-tSH-tHH-tHS | ||
| IL_8Y5S_062 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5S_063 | Triple sheared | ||
| IL_8Y5S_064 | Single bulged A | ||
| IL_8Y5S_065 | Kink-turn related | ||
| IL_8Y5S_066 | No text annotation | ||
| IL_8Y5S_067 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5S_068 | No text annotation | ||
| IL_8Y5S_069 | UAA/GAN related | ||
| IL_8Y5S_070 | No text annotation | ||
| IL_8Y5S_071 | Major groove platform | ||
| IL_8Y5S_072 | No text annotation | ||
| IL_8Y5S_073 | Single bulged U | ||
| IL_8Y5S_074 | Minor groove platform | ||
| IL_8Y5S_075 | Isolated tHS basepair with bulges | ||
| IL_8Y5S_076 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_077 | No text annotation | ||
| IL_8Y5S_078 | No text annotation | ||
| IL_8Y5S_079 | No text annotation | ||
| IL_8Y5S_080 | Single bulged U | ||
| IL_8Y5S_081 | Double sheared | ||
| IL_8Y5S_082 | No text annotation | ||
| IL_8Y5S_083 | Single stack bend | ||
| IL_8Y5S_084 | Major groove platform | ||
| IL_8Y5S_085 | No text annotation | ||
| IL_8Y5S_086 | Double sheared with non-canonical cWW | ||
| IL_8Y5S_087 | Major groove platform | ||
| IL_8Y5S_088 | Isolated non-canonical cWW with bulges | ||
| IL_8Y5S_089 | No text annotation | ||
| IL_8Y5S_090 | Major groove platform with intercalation | ||
| IL_8Y5S_091 | Single bulged A | ||
| IL_8Y5S_092 | tSH-tHS-tHW | ||
| IL_8Y5S_093 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5S_094 | C-loop | ||
| IL_8Y5S_095 | UAA/GAN related, with intercalation | ||
| IL_8Y5S_096 | Multiple bulged bases | ||
| IL_8Y5S_097 | UAA/GAN with extra cWW | ||
| IL_8Y5S_098 | No text annotation | ||
| IL_8Y5S_099 | Major groove intercalation | ||
| IL_8Y5S_100 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5S_101 | tHS double platform | ||
| IL_8Y5S_102 | Major groove intercalation | ||
| IL_8Y5S_103 | No text annotation | ||
| IL_8Y5S_104 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5S_105 | Symmetric double minor groove platform | ||
| IL_8Y5S_106 | Bacterial 5S Loop E | ||
| IL_8Y5S_107 | Single bulged G | ||
| IL_8Y5S_108 | Single bulged A | ||
| IL_8Y5S_109 | No text annotation | ||
| IL_8Y5S_110 | Minor groove platform | ||
| IL_8Y5S_111 | Multiple bulged bases | ||
| IL_8Y5S_112 | Minor groove platform with extra cWW | ||
| IL_8Y5S_113 | Minor groove platform | ||
| IL_8Y5S_114 | No text annotation | ||
| IL_8Y5S_115 | No text annotation | ||
| IL_8Y5S_116 | No text annotation | ||
| IL_8Y5S_117 | Isolated cWH basepair | ||
| IL_8Y5S_118 | tWH-tWH-tHW-tHW | ||
| IL_8Y5S_119 | Minor groove platform | ||
| IL_8Y5S_120 | Kink-turn with non-sequential stacking | ||
| IL_8Y5S_121 | No text annotation | ||
| IL_8Y5S_122 | C-loop | ||
| IL_8Y5S_123 | Single bulged U | ||
| IL_8Y5S_124 | C-loop | ||
| IL_8Y5S_125 | Single bulged G | ||
| IL_8Y5S_126 | No text annotation | ||
| IL_8Y5S_127 | No text annotation | ||
| IL_8Y5S_128 | tSH-tHW-tWW | ||
| IL_8Y5S_129 | No text annotation | ||
| IL_8Y5S_130 | SSU/LSU pseudoknot | ||
| IL_8Y5S_131 | No text annotation | ||
| IL_8Y5S_132 | No text annotation | ||
| IL_8Y5S_133 | tSH-tHW-tHS | ||
| IL_8Y5S_134 | Major groove platform | ||
| IL_8Y5S_135 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5S_136 | No text annotation | ||
| IL_8Y5S_137 | Major groove platform; stack outside cWW | ||
| IL_8Y5S_138 | Single stack bend | ||
| IL_8Y5S_139 | Tandem non-canonical cWW pairs | ||
| IL_8Y5S_140 | Triple non-canonical cWW pairs | ||
| IL_8Y5S_141 | Kink-turn | ||
| IL_8Y5S_142 | Left turn | ||
| IL_8Y5S_143 | tSH-tHW-tHS | ||
| IL_8Y5S_144 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5S_145 | Single bulged A | ||
| IL_8Y5S_146 | Single bulged G | ||
| IL_8Y5S_147 | Minor groove platform | ||
| IL_8Y5S_148 | Minor groove platform | ||
| IL_8Y5S_149 | Minor groove platform | ||
| IL_8Y5S_150 | Single stack bend | ||
| IL_8Y5S_151 | No text annotation | ||
| IL_8Y5S_152 | Single bulged U | ||
| IL_8Y5S_153 | Isolated cWS basepair | ||
| IL_8Y5S_154 | Minor groove platform | ||
| IL_8Y5S_155 | Single bulged A | ||
| IL_8Y5S_156 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_157 | No text annotation | ||
| IL_8Y5S_158 | Minor groove platform | ||
| IL_8Y5S_159 | No text annotation | ||
| IL_8Y5S_160 | No text annotation | ||
| IL_8Y5S_161 | 180 degree turn | ||
| IL_8Y5S_162 | Double sheared with non-canonical cWW | ||
| IL_8Y5S_163 | No text annotation | ||
| IL_8Y5S_164 | No text annotation | ||
| IL_8Y5S_165 | No text annotation | ||
| IL_8Y5S_166 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_167 | No text annotation | ||
| IL_8Y5S_168 | Isolated non-canonical cWW pair | ||
| IL_8Y5S_169 | Double sheared | ||
| IL_8Y5S_170 | Triple sheared related | ||
| IL_8Y5S_171 | Single bulged A | ||
| IL_8Y5S_172 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_8Y5S_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5S_001 | No text annotation | ||
| J3_8Y5S_002 | No text annotation | ||
| J3_8Y5S_003 | No text annotation | ||
| J3_8Y5S_004 | No text annotation | ||
| J3_8Y5S_005 | No text annotation | ||
| J3_8Y5S_006 | No text annotation | ||
| J3_8Y5S_007 | No text annotation | ||
| J3_8Y5S_008 | No text annotation | ||
| J3_8Y5S_009 | No text annotation | ||
| J3_8Y5S_010 | No text annotation | ||
| J3_8Y5S_011 | No text annotation | ||
| J3_8Y5S_012 | No text annotation | ||
| J3_8Y5S_013 | Kink-turn 3-way junction | ||
| J3_8Y5S_014 | No text annotation | ||
| J3_8Y5S_015 | No text annotation | ||
| J3_8Y5S_016 | No text annotation | ||
| J3_8Y5S_017 | No text annotation | ||
| J3_8Y5S_018 | No text annotation | ||
| J3_8Y5S_019 | No text annotation | ||
| J3_8Y5S_020 | No text annotation | ||
| J3_8Y5S_021 | No text annotation | ||
| J3_8Y5S_022 | No text annotation | ||
| J3_8Y5S_023 | No text annotation | ||
| J3_8Y5S_024 | No text annotation | ||
| J3_8Y5S_025 | No text annotation | ||
| J3_8Y5S_026 | No text annotation | ||
| J3_8Y5S_027 | No text annotation | ||
| J3_8Y5S_028 | No text annotation | ||
| J3_8Y5S_029 | No text annotation | ||
| J3_8Y5S_030 | No text annotation | ||
| J3_8Y5S_031 | No text annotation | ||
| J3_8Y5S_032 | No text annotation | ||
| J3_8Y5S_033 | No text annotation | ||
| J3_8Y5S_034 | No text annotation | ||
| J3_8Y5S_035 | No text annotation | ||
| J4_8Y5S_001 | No text annotation | ||
| J4_8Y5S_002 | No text annotation | ||
| J4_8Y5S_003 | No text annotation | ||
| J4_8Y5S_004 | No text annotation | ||
| J4_8Y5S_005 | No text annotation | ||
| J4_8Y5S_006 | No text annotation | ||
| J4_8Y5S_007 | No text annotation | ||
| J4_8Y5S_008 | No text annotation | ||
| J4_8Y5S_009 | No text annotation | ||
| J4_8Y5S_010 | No text annotation | ||
| J4_8Y5S_011 | No text annotation | ||
| J4_8Y5S_012 | No text annotation | ||
| J4_8Y5S_013 | No text annotation | ||
| J4_8Y5S_014 | No text annotation | ||
| J5_8Y5S_001 | No text annotation | ||
| J5_8Y5S_002 | No text annotation | ||
| J5_8Y5S_004 | No text annotation | ||
| J5_8Y5S_005 | No text annotation | ||
| J5_8Y5S_006 | No text annotation | ||
| J5_8Y5S_007 | No text annotation | ||
| J5_8Y5S_008 | No text annotation | ||
| J5_8Y5S_009 | No text annotation | ||
| J6_8Y5S_001 | No text annotation | ||
| J6_8Y5S_002 | No text annotation | ||
| J7_8Y5S_001 | No text annotation | ||
| J7_8Y5S_002 | No text annotation |
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