HL_8Y5S_083

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8Y5S|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5S_083 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2055

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8Y5S|1|3|G|462
8Y5S|1|3|U|463
8Y5S|1|3|U|464
8Y5S|1|3|A|465
8Y5S|1|3|A|466
8Y5S|1|3|U|467
8Y5S|1|3|A|468
8Y5S|1|3|C|469
8Y5S|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains