HL_8Y6O_003
3D structure
- PDB id
- 8Y6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.38 Å
Loop
- Sequence
- CGCAUAG
- Length
- 7 nucleotides
- Bulged bases
- 8Y6O|1|J|C|42, 8Y6O|1|J|A|43, 8Y6O|1|J|A|45
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y6O_003 not in the Motif Atlas
- Geometric match to HL_3SIU_002
- Geometric discrepancy: 0.1421
- The information below is about HL_3SIU_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_46530.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8Y6O|1|J|C|40
8Y6O|1|J|G|41
8Y6O|1|J|C|42
8Y6O|1|J|A|43
8Y6O|1|J|U|44
8Y6O|1|J|A|45
8Y6O|1|J|G|46
Current chains
- Chain J
- U4atac snRNA
Nearby chains
- Chain G
- Pre-mRNA-processing factor 6
- Chain L
- U4/U6 small nuclear ribonucleoprotein Prp31
- Chain O
- NHP2-like protein 1
- Chain Q
- Serine/threonine-protein kinase PRP4 homolog
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