8Y6O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8Y6O_001 | 1/B/35:47 | No text annotation | ||
| HL_8Y6O_002 | 1/B/104:109 | No text annotation | ||
| HL_8Y6O_003 | 1/J/40:46 | No text annotation | geometric HL_3SIU_002 HL_87381.1 | |
| HL_8Y6O_005 | 1/P/16:23 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_8Y6O_007 | 1/P/62:73 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y6O_004 | No text annotation | ||
| HL_8Y6O_006 | No text annotation | ||
| HL_8Y6O_008 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8Y6O_001 | 1/B/6:9, 1/B/68:75 | No text annotation | ||
| IL_8Y6O_002 | 1/B/19:23, 1/B/57:58 | No text annotation | ||
| IL_8Y6O_013 | 1/B/24:28, 1/B/54:56 | No text annotation | ||
| IL_8Y6O_004 | 1/J/10:12, 1/K/39:41 | Isolated non-canonical cWW pair | geometric IL_5MWI_006 NA | |
| IL_8Y6O_005 | 1/J/13:16, 1/K/35:38 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_8Y6O_012 | 1/J/30:39, 1/J/47:53 | No text annotation | ||
| IL_8Y6O_007 | 1/J/33:39, 1/J/47:50 | Kink-turn from U4 | geometric IL_3SIU_002 IL_51265.4 | |
| IL_8Y6O_009 | 1/J/89:91, 1/J/106:109 | No text annotation | ||
| IL_8Y6O_010 | 1/P/105:107, 1/P/128:129 | Single bulged A | geometric IL_4R4V_003 IL_14190.1 | |
| IL_8Y6O_011 | 1/P/111:113, 1/P/123:124 | Single bulged U | geometric IL_6UFH_004 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y6O_003 | No text annotation | ||
| IL_8Y6O_006 | Isolated non-canonical cWW contact | ||
| IL_8Y6O_008 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_8Y6O_001 | 1/P/12:13, 1/P/26:27, 1/P/55:56, 1/P/79:80 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y6O_001 | No text annotation |
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