HL_8Y6O_005

3D structure

PDB id

8Y6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

CGUGAGUG

Length

8 nucleotides

Bulged bases

8Y6O|1|P|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y6O_005 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3182

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y6O|1|P|C|16
8Y6O|1|P|G|17
8Y6O|1|P|U|18
8Y6O|1|P|G|19
8Y6O|1|P|A|20
8Y6O|1|P|G|21
8Y6O|1|P|U|22
8Y6O|1|P|G|23

Current chains

Chain P

U11 snRNA

Nearby chains

Chain W

U11/U12 small nuclear ribonucleoprotein 35 kDa protein

Chain X

U11/U12 small nuclear ribonucleoprotein 25 kDa protein