HL_8YDE_010

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8YDE|1|1|G|329, 8YDE|1|1|A|330, 8YDE|1|1|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDE_010 not in the Motif Atlas

Geometric match to HL_9E6Q_012

Geometric discrepancy: 0.0925

The information below is about HL_9E6Q_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

8YDE|1|1|G|327
8YDE|1|1|U|328
8YDE|1|1|G|329
8YDE|1|1|A|330
8YDE|1|1|C|331
8YDE|1|1|A|332
8YDE|1|1|G|333
8YDE|1|1|C|334
8YDE|1|1|C|335

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24