HL_9E6Q_012

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

9E6Q|1|1|G|357, 9E6Q|1|1|A|358, 9E6Q|1|1|U|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9E6Q_012 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.227

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9E6Q|1|1|G|355
9E6Q|1|1|U|356
9E6Q|1|1|G|357
9E6Q|1|1|A|358
9E6Q|1|1|U|359
9E6Q|1|1|A|360
9E6Q|1|1|G|361
9E6Q|1|1|C|362
9E6Q|1|1|C|363

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AV

Large ribosomal subunit protein uL24