HL_8YDF_005

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_005 not in the Motif Atlas

Geometric match to HL_8B0X_037

Geometric discrepancy: 0.1914

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8YDF|1|1|U|158
8YDF|1|1|G|159
8YDF|1|1|A|160
8YDF|1|1|A|161
8YDF|1|1|U|162
8YDF|1|1|C|163
8YDF|1|1|C|164
8YDF|1|1|A|165
8YDF|1|1|U|166
8YDF|1|1|A|167
8YDF|1|1|G|168

Current chains

Chain 1

23S rRNA

Nearby chains

Chain x

50S ribosomal protein L28