HL_8YDF_012

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8YDF|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_012 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.0889

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8YDF|1|1|G|410
8YDF|1|1|G|411
8YDF|1|1|A|412
8YDF|1|1|C|413
8YDF|1|1|C|414
8YDF|1|1|A|415
8YDF|1|1|U|416
8YDF|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15