HL_8YDF_044
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8YDF|1|1|A|1780, 8YDF|1|1|U|1781, 8YDF|1|1|U|1782, 8YDF|1|1|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDF_044 not in the Motif Atlas
- Geometric match to HL_8B0X_073
- Geometric discrepancy: 0.1305
- The information below is about HL_8B0X_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8YDF|1|1|U|1777
8YDF|1|1|U|1778
8YDF|1|1|U|1779
8YDF|1|1|A|1780
8YDF|1|1|U|1781
8YDF|1|1|U|1782
8YDF|1|1|A|1783
8YDF|1|1|A|1784
8YDF|1|1|A|1785
8YDF|1|1|A|1786
8YDF|1|1|A|1787
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain b
- 50S ribosomal protein L2
- Chain s
- 50S ribosomal protein L22
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