Motif HL_87681.1 Version HL_87681.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_047 | 4V9F | 0.0915 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | tWH |
| 2 | HL_9DFE_043 | 9DFE | 0.0792 | 4 | 1A | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 3 | HL_8B0X_073 | 8B0X | 0.0000 | 4 | a | LSU rRNA | U | 1779 | U | 1780 | U | 1781 | A | 1785 | A | 1786 | A | 1787 | A | 1789 | cWW | tWH | tWH |
| 4 | HL_9E6Q_045 | 9E6Q | 0.0489 | 4 | 1 | LSU rRNA | U | 1913 | U | 1914 | U | 1915 | A | 1919 | A | 1920 | A | 1921 | A | 1923 | cWW | tWH | tWH |
| 5 | HL_4WF9_043 | 4WF9 | 0.0898 | 4 | X | LSU rRNA | U | 1804 | U | 1805 | U | 1806 | A | 1810 | A | 1811 | A | 1812 | A | 1814 | cWW | tWH | |
| 6 | HL_8P9A_157 | 8P9A | 0.1664 | 4 | AR | LSU rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 7 | HL_9AXU_042 | 9AXU | 0.1383 | 4 | 2 | LSU rRNA | U | 2223 | C | 2224 | U | 2225 | U | 2229 | A | 2230 | A | 2231 | A | 2233 | cWW | tWH | tWH |
| 8 | HL_8OI5_041 | 8OI5 | 0.1670 | 4 | 1 | LSU rRNA | U | 2113 | C | 2114 | U | 2115 | U | 2119 | A | 2120 | A | 2121 | A | 2123 | cWW | tWH | tWH |
| 9 | HL_8GLP_122 | 8GLP | 0.2461 | 4 | L5 | LSU rRNA | PSU | 3639 | U | 3640 | U | 3641 | U | 3645 | A | 3646 | A | 3647 | A | 3649 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAAAA | 3 |
| UCUAGUAACAA | 1 |
| UUUACCAAAAA | 1 |
| UUUAUUAAAAA | 1 |
| UUUAACAAAAA | 1 |
| UUUAUCAAAAA | 1 |
| (PSU)UUAAUUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUAAA | 3 |
| CUAGUAACA | 1 |
| UUACCAAAA | 1 |
| UUAUUAAAA | 1 |
| UUAACAAAA | 1 |
| UUAUCAAAA | 1 |
| UUAAUUAAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.14 | Max 0.30
Coloring options: