HL_8YDF_053
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8YDF|1|1|A|2268, 8YDF|1|1|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDF_053 not in the Motif Atlas
- Geometric match to HL_8B0X_081
- Geometric discrepancy: 0.1203
- The information below is about HL_8B0X_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8YDF|1|1|C|2264
8YDF|1|1|U|2265
8YDF|1|1|A|2266
8YDF|1|1|A|2267
8YDF|1|1|A|2268
8YDF|1|1|G|2269
8YDF|1|1|A|2270
8YDF|1|1|G|2271
8YDF|1|1|U|2272
8YDF|1|1|A|2273
8YDF|1|1|A|2274
8YDF|1|1|C|2275
8YDF|1|1|G|2276
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
Coloring options: