HL_8YDF_065
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8YDF|1|1|G|2751, 8YDF|1|1|C|2755
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDF_065 not in the Motif Atlas
- Geometric match to HL_8B0X_093
- Geometric discrepancy: 0.0918
- The information below is about HL_8B0X_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 10
Unit IDs
8YDF|1|1|C|2745
8YDF|1|1|U|2746
8YDF|1|1|G|2747
8YDF|1|1|A|2748
8YDF|1|1|A|2749
8YDF|1|1|A|2750
8YDF|1|1|G|2751
8YDF|1|1|C|2752
8YDF|1|1|A|2753
8YDF|1|1|U|2754
8YDF|1|1|C|2755
8YDF|1|1|U|2756
8YDF|1|1|A|2757
8YDF|1|1|A|2758
8YDF|1|1|G|2759
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain j
- 50S ribosomal protein L13
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