HL_8YDF_083

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8YDF|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_083 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.1779

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8YDF|1|3|G|462
8YDF|1|3|U|463
8YDF|1|3|U|464
8YDF|1|3|A|465
8YDF|1|3|A|466
8YDF|1|3|U|467
8YDF|1|3|A|468
8YDF|1|3|C|469
8YDF|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains