HL_8YDF_086
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDF_086 not in the Motif Atlas
- Geometric match to HL_8B0X_014
- Geometric discrepancy: 0.1122
- The information below is about HL_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8YDF|1|3|C|689
8YDF|1|3|G|690
8YDF|1|3|G|691
8YDF|1|3|U|692
8YDF|1|3|G|693
8YDF|1|3|A|694
8YDF|1|3|A|695
8YDF|1|3|A|696
8YDF|1|3|U|697
8YDF|1|3|G|698
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 7
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain P
- 30S ribosomal protein S11
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