HL_8YDF_101

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8YDF|1|3|U|1451, 8YDF|1|3|C|1452

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDF_101 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2758

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8YDF|1|3|C|1449
8YDF|1|3|U|1450
8YDF|1|3|U|1451
8YDF|1|3|C|1452
8YDF|1|3|G|1453
8YDF|1|3|G|1454

Current chains

Chain 3

16S rRNA

Nearby chains