HL_8YDG_010
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8YDG|1|1|G|329, 8YDG|1|1|A|330, 8YDG|1|1|C|331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDG_010 not in the Motif Atlas
- Geometric match to HL_8B0X_043
- Geometric discrepancy: 0.127
- The information below is about HL_8B0X_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27670.3
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 15
Unit IDs
8YDG|1|1|G|327
8YDG|1|1|U|328
8YDG|1|1|G|329
8YDG|1|1|A|330
8YDG|1|1|C|331
8YDG|1|1|A|332
8YDG|1|1|G|333
8YDG|1|1|C|334
8YDG|1|1|C|335
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
Coloring options: