RNA 3D Hub //

8YDG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8YDG_0061/1/188:208No text annotation
HL_8YDG_0081/1/246:252No text annotation
geometric
HL_8B0X_040
HL_76371.2
HL_8YDG_0131/1/462:467GNRA
geometric
HL_2OIU_003
HL_34789.2
HL_8YDG_0211/1/744:753No text annotation
geometric
HL_7A0S_022
HL_50204.1
HL_8YDG_0221/1/779:785UNCG variation
geometric
HL_7A0S_023
HL_51020.2
HL_8YDG_0321/1/1324:1330No text annotation
geometric
HL_8B0X_061
HL_49081.1
HL_8YDG_0391/1/1612:1619No text annotation
geometric
HL_9DFE_038
HL_28592.1
HL_8YDG_0401/1/1630:1636No text annotation
geometric
HL_8B0X_069
HL_34789.2
HL_8YDG_0411/1/1691:1696UNCG
geometric
HL_1I6U_001
HL_61337.2
HL_8YDG_0451/1/1806:1811No text annotation
geometric
HL_8B0X_074
HL_37569.2
HL_8YDG_0481/1/1949:1957No text annotation
geometric
HL_4WF9_046
HL_61418.2
HL_8YDG_0491/1/2027:2036No text annotation
geometric
HL_8B0X_078
HL_78372.1
HL_8YDG_0611/1/2551:2557No text annotation
geometric
HL_9DFE_060
HL_48677.1
HL_8YDG_0621/1/2594:2599GNRA
geometric
HL_2Z75_004
HL_34789.2
HL_8YDG_0851/3/689:698No text annotation
geometric
HL_4LFB_015
HL_38491.2

Problematic loops

#loop idProblemSequence
HL_8YDG_001No text annotation
HL_8YDG_002No text annotation
HL_8YDG_003No text annotation
HL_8YDG_004No text annotation
HL_8YDG_005No text annotation
HL_8YDG_007UNCG
HL_8YDG_009No text annotation
HL_8YDG_010No text annotation
HL_8YDG_011No text annotation
HL_8YDG_012No text annotation
HL_8YDG_014No text annotation
HL_8YDG_015No text annotation
HL_8YDG_016No text annotation
HL_8YDG_017No text annotation
HL_8YDG_018GNRA
HL_8YDG_019No text annotation
HL_8YDG_020GNRA wlth tandem sheared
HL_8YDG_023No text annotation
HL_8YDG_024No text annotation
HL_8YDG_025No text annotation
HL_8YDG_026No text annotation
HL_8YDG_027No text annotation
HL_8YDG_028No text annotation
HL_8YDG_029No text annotation
HL_8YDG_030No text annotation
HL_8YDG_031No text annotation
HL_8YDG_033No text annotation
HL_8YDG_034No text annotation
HL_8YDG_035No text annotation
HL_8YDG_036No text annotation
HL_8YDG_037No text annotation
HL_8YDG_038Mini UNCG
HL_8YDG_042No text annotation
HL_8YDG_043No text annotation
HL_8YDG_044No text annotation
HL_8YDG_046GNRA related
HL_8YDG_047No text annotation
HL_8YDG_050No text annotation
HL_8YDG_051No text annotation
HL_8YDG_052No text annotation
HL_8YDG_053No text annotation
HL_8YDG_054No text annotation
HL_8YDG_055No text annotation
HL_8YDG_056No text annotation
HL_8YDG_057GNRA
HL_8YDG_058No text annotation
HL_8YDG_059No text annotation
HL_8YDG_060No text annotation
HL_8YDG_063GNRA
HL_8YDG_064No text annotation
HL_8YDG_065No text annotation
HL_8YDG_066No text annotation
HL_8YDG_067No text annotation
HL_8YDG_068No text annotation
HL_8YDG_069No text annotation
HL_8YDG_070Mini UNCG
HL_8YDG_071No text annotation
HL_8YDG_072No text annotation
HL_8YDG_073tRNA anticodon loop
HL_8YDG_074GNRA
HL_8YDG_075No text annotation
HL_8YDG_076No text annotation
HL_8YDG_077No text annotation
HL_8YDG_078No text annotation
HL_8YDG_079UNCG
HL_8YDG_080GNRA
HL_8YDG_081No text annotation
HL_8YDG_082GNRA related
HL_8YDG_083No text annotation
HL_8YDG_084No text annotation
HL_8YDG_086GNRA
HL_8YDG_087No text annotation
HL_8YDG_088No text annotation
HL_8YDG_089GNRA
HL_8YDG_090GNRA
HL_8YDG_091No text annotation
HL_8YDG_092GNRA
HL_8YDG_093GNRA
HL_8YDG_094T-loop related
HL_8YDG_095No text annotation
HL_8YDG_096No text annotation
HL_8YDG_097GNRA
HL_8YDG_098T-loop with 3 stacked bulged bases
HL_8YDG_099No text annotation
HL_8YDG_100No text annotation
HL_8YDG_101GNRA
HL_8YDG_102No text annotation
HL_8YDG_103No text annotation
HL_8YDG_104No text annotation
HL_8YDG_105tRNA D-loop
HL_8YDG_106No text annotation
HL_8YDG_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8YDG_0011/1/24:30,
1/1/510:516		No text annotation
geometric
IL_8B0X_065
IL_22311.1
IL_8YDG_0141/1/674:678,
1/1/799:806		No text annotation
geometric
IL_9E6Q_026
IL_73855.1
IL_8YDG_0151/1/697:698,
1/1/763:765		No text annotation
geometric
IL_8B0X_081
IL_14190.2
IL_8YDG_0161/1/702:703,
1/1/728:730		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_8YDG_0171/1/703:707,
1/1/724:728		Triple sheared
geometric
IL_4V9F_027
IL_15190.2
IL_8YDG_0181/1/738:740,
1/1/757:758		Major groove platform
geometric
IL_4WF9_026
IL_48076.8
IL_8YDG_0191/1/775:777,
1/1/787:791		No text annotation
geometric
IL_8B0X_085
IL_89509.1
IL_8YDG_0351/1/1024:1030,
1/1/1124:1140		No text annotation
geometric
IL_8B0X_101
IL_50715.4
IL_8YDG_0431/1/1262:1269,
1/1/2011:2017		No text annotation
geometric
IL_8B0X_108
IL_62167.2
IL_8YDG_0451/1/1319:1323,
1/1/1331:1333		No text annotation
geometric
IL_8B0X_110
IL_63596.12
IL_8YDG_0501/1/1432:1435,
1/1/1557:1561		No text annotation
geometric
IL_8B0X_115
IL_28284.1
IL_8YDG_0561/1/1526:1531,
1/1/1540:1546		No text annotation
IL_8YDG_0571/1/1651:1656,
1/1/2004:2006		No text annotation
geometric
IL_7A0S_059
IL_12566.5
IL_8YDG_0581/1/1663:1665,
1/1/1995:1997		No text annotation
geometric
IL_8B0X_124
IL_10432.1
IL_8YDG_0591/1/1666:1669,
1/1/1993:1994		No text annotation
geometric
IL_8B0X_125
IL_74641.2
IL_8YDG_0601/1/1666:1674,
1/1/1990:1994		No text annotation
geometric
IL_8B0X_180
IL_80252.1
IL_8YDG_0611/1/1669:1674,
1/1/1990:1993		No text annotation
geometric
IL_9E6Q_065
IL_28217.1
IL_8YDG_0621/1/1686:1691,
1/1/1696:1702		No text annotation
geometric
IL_8B0X_127
IL_20700.1
IL_8YDG_0731/1/1934:1945,
1/1/1961:1964		No text annotation
IL_8YDG_0741/1/2050:2052,
1/1/2617:2618		No text annotation
geometric
IL_9FN2_003
IL_48076.8
IL_8YDG_0751/1/2054:2056,
1/1/2612:2615		No text annotation
IL_8YDG_0771/1/2070:2071,
1/1/2438:2441		Minor groove platform
geometric
IL_4V9F_075
IL_34520.2
IL_8YDG_0781/1/2081:2083,
1/1/2236:2239		Isolated tHS basepair with bulges
geometric
IL_7A0S_077
IL_87316.1
IL_8YDG_0921/1/2509:2513,
1/1/2571:2579		No text annotation
IL_8YDG_0951/1/2636:2640,
1/1/2774:2782		No text annotation
geometric
IL_8B0X_160
IL_04638.4
IL_8YDG_0981/1/2687:2691,
1/1/2718:2722		UAA/GAN related, with intercalation
geometric
IL_4WF9_102
IL_82016.1
IL_8YDG_1021/1/2843:2846,
1/1/2870:2874		No text annotation
geometric
IL_8B0X_169
IL_60988.2
IL_8YDG_1101/3/47:52,
1/3/359:361		No text annotation
geometric
IL_8B0X_003
IL_32983.2
IL_8YDG_1391/3/673:677,
1/3/713:717		No text annotation
geometric
IL_8B0X_176
IL_71154.2
IL_8YDG_1661/3/1416:1419,
1/3/1481:1484		Double sheared
geometric
IL_8CRE_471
IL_58355.2

Problematic loops

#loop idProblemSequence
IL_8YDG_002Single bulged A
IL_8YDG_003Minor groove platform related
IL_8YDG_004No text annotation
IL_8YDG_005No text annotation
IL_8YDG_006No text annotation
IL_8YDG_007No text annotation
IL_8YDG_008No text annotation
IL_8YDG_009No text annotation
IL_8YDG_010No text annotation
IL_8YDG_011Isolated non-canonical cWW pair
IL_8YDG_012No text annotation
IL_8YDG_013Isolated non-canonical cWW pair
IL_8YDG_020No text annotation
IL_8YDG_021No text annotation
IL_8YDG_022No text annotation
IL_8YDG_023No text annotation
IL_8YDG_024No text annotation
IL_8YDG_025No text annotation
IL_8YDG_026No text annotation
IL_8YDG_027No text annotation
IL_8YDG_028No text annotation
IL_8YDG_029No text annotation
IL_8YDG_030No text annotation
IL_8YDG_031UAA/GAN with extra cWW
IL_8YDG_032No text annotation
IL_8YDG_033No text annotation
IL_8YDG_034No text annotation
IL_8YDG_036No text annotation
IL_8YDG_037Tandem non-canonical cWW pairs
IL_8YDG_038No text annotation
IL_8YDG_039No text annotation
IL_8YDG_040No text annotation
IL_8YDG_041No text annotation
IL_8YDG_042No text annotation
IL_8YDG_044Major groove platform; stack outside cWW
IL_8YDG_046No text annotation
IL_8YDG_047No text annotation
IL_8YDG_048No text annotation
IL_8YDG_049UAA/GAN
IL_8YDG_051No text annotation
IL_8YDG_052No text annotation
IL_8YDG_053No text annotation
IL_8YDG_054No text annotation
IL_8YDG_055Single bulged A
IL_8YDG_063No text annotation
IL_8YDG_064No text annotation
IL_8YDG_065No text annotation
IL_8YDG_066No text annotation
IL_8YDG_067No text annotation
IL_8YDG_068Major groove intercalation
IL_8YDG_069No text annotation
IL_8YDG_070No text annotation
IL_8YDG_071No text annotation
IL_8YDG_072Bulged stacked bases
IL_8YDG_076No text annotation
IL_8YDG_079No text annotation
IL_8YDG_080No text annotation
IL_8YDG_081No text annotation
IL_8YDG_082No text annotation
IL_8YDG_083No text annotation
IL_8YDG_084Double sheared
IL_8YDG_085No text annotation
IL_8YDG_086No text annotation
IL_8YDG_087Single stack bend
IL_8YDG_088Major groove platform
IL_8YDG_089No text annotation
IL_8YDG_090Double sheared with non-canonical cWW
IL_8YDG_091Major groove platform
IL_8YDG_093No text annotation
IL_8YDG_094Single bulged A
IL_8YDG_096Sarcin-Ricin target in LSU H95; G-bulge
IL_8YDG_097C-loop
IL_8YDG_099No text annotation
IL_8YDG_100No text annotation
IL_8YDG_101Major groove intercalation
IL_8YDG_103No text annotation
IL_8YDG_104Major groove intercalation
IL_8YDG_105No text annotation
IL_8YDG_106No text annotation
IL_8YDG_107No text annotation
IL_8YDG_108No text annotation
IL_8YDG_109No text annotation
IL_8YDG_111No text annotation
IL_8YDG_112Major groove intercalation
IL_8YDG_113No text annotation
IL_8YDG_114Minor groove platform
IL_8YDG_115No text annotation
IL_8YDG_116No text annotation
IL_8YDG_117No text annotation
IL_8YDG_118No text annotation
IL_8YDG_119No text annotation
IL_8YDG_120No text annotation
IL_8YDG_121No text annotation
IL_8YDG_122No text annotation
IL_8YDG_123No text annotation
IL_8YDG_124No text annotation
IL_8YDG_125Single bulged G
IL_8YDG_126No text annotation
IL_8YDG_127No text annotation
IL_8YDG_128No text annotation
IL_8YDG_129No text annotation
IL_8YDG_130No text annotation
IL_8YDG_131No text annotation
IL_8YDG_132No text annotation
IL_8YDG_133No text annotation
IL_8YDG_134No text annotation
IL_8YDG_135Major groove minor groove platform; mini C-loop
IL_8YDG_136No text annotation
IL_8YDG_137Single stack bend
IL_8YDG_138No text annotation
IL_8YDG_140No text annotation
IL_8YDG_141No text annotation
IL_8YDG_142tSH-tHW-tHS
IL_8YDG_143No text annotation
IL_8YDG_144No text annotation
IL_8YDG_145Single bulged G
IL_8YDG_146No text annotation
IL_8YDG_147No text annotation
IL_8YDG_148Single stack bend
IL_8YDG_149No text annotation
IL_8YDG_150No text annotation
IL_8YDG_151Isolated cWS basepair
IL_8YDG_152No text annotation
IL_8YDG_153No text annotation
IL_8YDG_154No text annotation
IL_8YDG_155No text annotation
IL_8YDG_156Minor groove platform
IL_8YDG_157No text annotation
IL_8YDG_158No text annotation
IL_8YDG_159No text annotation
IL_8YDG_160No text annotation
IL_8YDG_161No text annotation
IL_8YDG_162No text annotation
IL_8YDG_163Isolated non-canonical cWW pair
IL_8YDG_164No text annotation
IL_8YDG_165No text annotation
IL_8YDG_167No text annotation
IL_8YDG_168No text annotation
IL_8YDG_169No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8YDG_0011/1/30:31,
1/1/474:481,
1/1/509:510		No text annotation
geometric
J3_8B0X_014
J3_68715.1
J3_8YDG_0021/1/30:31,
1/1/474:484,
1/1/496:510		No text annotation
geometric
J3_8B0X_032
J3_17917.1
J3_8YDG_0071/1/698:700,
1/1/732:736,
1/1/760:763		No text annotation
geometric
J3_8B0X_017
J3_69816.1
J3_8YDG_0091/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642		No text annotation
geometric
J3_8B0X_018
J3_32852.7
J3_8YDG_0101/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622		No text annotation
geometric
J3_8B0X_019
J3_47341.1
J3_8YDG_0211/3/46:52,
1/3/359:369,
1/3/392:395		No text annotation
J4_8YDG_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010		No text annotation
J4_8YDG_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979		No text annotation
J4_8YDG_0101/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771		No text annotation
J4_8YDG_0161/6/7:10,
1/6/25:28,
1/6/42:49,
1/6/65:66		No text annotation
J5_8YDG_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018		No text annotation
J5_8YDG_0031/1/584:591,
1/1/666:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256		No text annotation
J5_8YDG_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990		No text annotation
J5_8YDG_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611		No text annotation
J7_8YDG_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895		No text annotation
J7_8YDG_0021/1/817:822,
1/1/835:838,
1/1/940:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_8YDG_003No text annotation
J3_8YDG_004No text annotation
J3_8YDG_005No text annotation
J3_8YDG_006No text annotation
J3_8YDG_008No text annotation
J3_8YDG_011No text annotation
J3_8YDG_012No text annotation
J3_8YDG_013No text annotation
J3_8YDG_014No text annotation
J3_8YDG_015No text annotation
J3_8YDG_016No text annotation
J3_8YDG_017No text annotation
J3_8YDG_018No text annotation
J3_8YDG_019No text annotation
J3_8YDG_020No text annotation
J3_8YDG_022No text annotation
J3_8YDG_023No text annotation
J3_8YDG_024No text annotation
J3_8YDG_025No text annotation
J3_8YDG_026No text annotation
J3_8YDG_027No text annotation
J3_8YDG_028No text annotation
J3_8YDG_029No text annotation
J3_8YDG_030No text annotation
J3_8YDG_031No text annotation
J3_8YDG_032No text annotation
J4_8YDG_001No text annotation
J4_8YDG_002No text annotation
J4_8YDG_004No text annotation
J4_8YDG_005No text annotation
J4_8YDG_006No text annotation
J4_8YDG_008No text annotation
J4_8YDG_009No text annotation
J4_8YDG_011No text annotation
J4_8YDG_012No text annotation
J4_8YDG_013No text annotation
J4_8YDG_014No text annotation
J4_8YDG_015No text annotation
J5_8YDG_001No text annotation
J5_8YDG_006No text annotation
J5_8YDG_007No text annotation
J5_8YDG_008No text annotation
J5_8YDG_009No text annotation
J6_8YDG_001No text annotation
J6_8YDG_002No text annotation

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