HL_8YDG_037

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CACUACGGUG

Length

10 nucleotides

Bulged bases

8YDG|1|1|A|1535, 8YDG|1|1|C|1536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDG|1|1|C|1531
8YDG|1|1|A|1532
8YDG|1|1|C|1533
8YDG|1|1|U|1534
8YDG|1|1|A|1535
8YDG|1|1|C|1536
8YDG|1|1|G|1537
8YDG|1|1|G|1538
8YDG|1|1|U|1539
8YDG|1|1|G|1540

Current chains

Chain 1

23S rRNA

Nearby chains