HL_8YDG_042

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8YDG|1|1|U|1729, 8YDG|1|1|C|1730, 8YDG|1|1|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDG_042 not in the Motif Atlas

Geometric match to HL_8P9A_231

Geometric discrepancy: 0.3611

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57992.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8YDG|1|1|C|1727
8YDG|1|1|C|1728
8YDG|1|1|U|1729
8YDG|1|1|C|1730
8YDG|1|1|G|1731
8YDG|1|1|C|1732
8YDG|1|1|G|1733

Current chains

Chain 1

23S rRNA

Nearby chains