HL_8YDG_054

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

8YDG|1|1|A|2311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDG|1|1|G|2303
8YDG|1|1|G|2304
8YDG|1|1|U|2305
8YDG|1|1|C|2306
8YDG|1|1|G|2307
8YDG|1|1|G|2308
8YDG|1|1|A|2309
8YDG|1|1|C|2310
8YDG|1|1|A|2311
8YDG|1|1|U|2312
8YDG|1|1|C|2313

Current chains

Chain 1

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L5