HL_8YDG_079

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8YDG|1|3|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDG_079 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.2529

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8YDG|1|3|C|342
8YDG|1|3|U|343
8YDG|1|3|A|344
8YDG|1|3|C|345
8YDG|1|3|G|346
8YDG|1|3|G|347

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19