HL_8YDG_096

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8YDG|1|3|U|1168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDG_096 not in the Motif Atlas

Geometric match to HL_8B0X_024

Geometric discrepancy: 0.2148

The information below is about HL_8B0X_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8YDG|1|3|U|1165
8YDG|1|3|G|1166
8YDG|1|3|A|1167
8YDG|1|3|U|1168
8YDG|1|3|A|1169
8YDG|1|3|A|1170
8YDG|1|3|A|1171

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain Z

30S ribosomal protein S21