HL_8YDH_009

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8YDH|1|1|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDH_009 not in the Motif Atlas

Geometric match to HL_8B0X_041

Geometric discrepancy: 0.0906

The information below is about HL_8B0X_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

8YDH|1|1|C|305
8YDH|1|1|U|306
8YDH|1|1|G|307
8YDH|1|1|G|308
8YDH|1|1|A|309
8YDH|1|1|A|310
8YDH|1|1|A|311
8YDH|1|1|G|312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24