8YDH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8YDH_003 | 1/1/123:128 | No text annotation | geometric HL_8B0X_035 HL_82710.3 | |
| HL_8YDH_006 | 1/1/188:208 | No text annotation | ||
| HL_8YDH_008 | 1/1/246:252 | No text annotation | geometric HL_8B0X_040 HL_76371.2 | |
| HL_8YDH_011 | 1/1/382:392 | No text annotation | geometric HL_8B0X_044 HL_91503.8 | |
| HL_8YDH_012 | 1/1/410:417 | Pseudoknot geometry | geometric HL_7A0S_014 HL_30680.5 | |
| HL_8YDH_013 | 1/1/462:467 | No text annotation | geometric HL_8B0X_025 HL_34789.2 | |
| HL_8YDH_016 | 1/1/566:575 | No text annotation | geometric HL_8B0X_048 HL_33597.2 | |
| HL_8YDH_018 | 1/1/629:634 | No text annotation | geometric HL_8B0X_050 HL_34789.2 | |
| HL_8YDH_019 | 1/1/641:647 | No text annotation | geometric HL_8B0X_051 HL_07380.1 | |
| HL_8YDH_020 | 1/1/712:719 | No text annotation | geometric HL_8B0X_052 HL_98423.2 | |
| HL_8YDH_021 | 1/1/744:753 | No text annotation | geometric HL_7A0S_022 HL_50204.1 | |
| HL_8YDH_022 | 1/1/779:785 | UNCG variation | geometric HL_7A0S_023 HL_51020.2 | |
| HL_8YDH_023 | 1/1/826:831 | No text annotation | geometric HL_8B0X_055 HL_27530.1 | |
| HL_8YDH_025 | 1/1/955:962 | GNRA | geometric HL_9DFE_025 HL_34789.2 | |
| HL_8YDH_026 | 1/1/978:985 | No text annotation | geometric HL_8B0X_058 HL_47171.1 | |
| HL_8YDH_030 | 1/1/1222:1227 | No text annotation | geometric HL_8B0X_059 HL_34789.2 | |
| HL_8YDH_031 | 1/1/1281:1289 | No text annotation | geometric HL_8B0X_060 HL_33597.2 | |
| HL_8YDH_032 | 1/1/1324:1330 | No text annotation | geometric HL_8B0X_061 HL_49081.1 | |
| HL_8YDH_033 | 1/1/1363:1368 | No text annotation | geometric HL_8B0X_062 HL_34789.2 | |
| HL_8YDH_038 | 1/1/1565:1568 | Mini UNCG | geometric HL_5FQ5_002 HL_90436.2 | |
| HL_8YDH_041 | 1/1/1691:1696 | UNCG | geometric HL_1I6U_001 HL_61337.2 | |
| HL_8YDH_044 | 1/1/1777:1787 | No text annotation | geometric HL_8B0X_073 HL_87681.1 | |
| HL_8YDH_045 | 1/1/1806:1811 | GNRA related | geometric HL_3OXE_002 HL_37569.2 | |
| HL_8YDH_047 | 1/1/1910:1920 | No text annotation | geometric HL_9DFE_046 HL_82185.1 | |
| HL_8YDH_048 | 1/1/1949:1957 | No text annotation | geometric HL_8B0X_077 HL_61418.2 | |
| HL_8YDH_049 | 1/1/2027:2036 | No text annotation | geometric HL_8B0X_078 HL_78372.1 | |
| HL_8YDH_051 | 1/1/2209:2215 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_8YDH_052 | 1/1/2248:2256 | No text annotation | geometric HL_7A0S_052 HL_11974.2 | |
| HL_8YDH_053 | 1/1/2264:2276 | No text annotation | geometric HL_8B0X_081 HL_02042.1 | |
| HL_8YDH_055 | 1/1/2324:2331 | No text annotation | geometric HL_8B0X_083 HL_52651.2 | |
| HL_8YDH_056 | 1/1/2356:2361 | No text annotation | geometric HL_8B0X_084 HL_34789.2 | |
| HL_8YDH_058 | 1/1/2404:2413 | No text annotation | geometric HL_8B0X_086 HL_51853.2 | |
| HL_8YDH_059 | 1/1/2471:2479 | No text annotation | geometric HL_4WF9_056 HL_52011.1 | |
| HL_8YDH_061 | 1/1/2551:2557 | No text annotation | geometric HL_8P9A_174 HL_48677.1 | |
| HL_8YDH_062 | 1/1/2594:2599 | GNRA | geometric HL_3IGI_003 HL_34789.2 | |
| HL_8YDH_067 | 1/1/2819:2827 | No text annotation | geometric HL_8B0X_095 HL_37889.1 | |
| HL_8YDH_069 | 1/2/34:48 | No text annotation | geometric HL_8B0X_102 HL_97756.3 | |
| HL_8YDH_070 | 1/2/38:44 | No text annotation | geometric HL_8B0X_097 HL_59381.2 | |
| HL_8YDH_072 | 1/3/12:22 | No text annotation | geometric HL_8B0X_001 HL_73535.1 | |
| HL_8YDH_078 | 1/3/296:301 | No text annotation | geometric HL_8B0X_006 HL_34789.2 | |
| HL_8YDH_084 | 1/3/522:527 | No text annotation | geometric HL_8B0X_099 HL_34789.2 | |
| HL_8YDH_088 | 1/3/786:796 | No text annotation | geometric HL_4LFB_017 HL_38491.2 | |
| HL_8YDH_091 | 1/3/897:902 | No text annotation | geometric HL_8B0X_018 HL_34789.2 | |
| HL_8YDH_092 | 1/3/963:972 | No text annotation | geometric HL_8B0X_019 HL_97521.1 | |
| HL_8YDH_094 | 1/3/1076:1081 | No text annotation | geometric HL_8B0X_021 HL_34789.2 | |
| HL_8YDH_095 | 1/3/1089:1096 | No text annotation | geometric HL_8B0X_022 HL_63894.2 | |
| HL_8YDH_102 | 1/3/1515:1520 | No text annotation | geometric HL_8B0X_029 HL_34789.2 | |
| HL_8YDH_106 | 1/6/13:22 | No text annotation | geometric HL_8B0X_030 HL_63054.2 | |
| HL_8YDH_107 | 1/6/31:39 | No text annotation | geometric HL_8B0X_031 HL_81376.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8YDH_001 | No text annotation | ||
| HL_8YDH_002 | No text annotation | ||
| HL_8YDH_004 | No text annotation | ||
| HL_8YDH_005 | No text annotation | ||
| HL_8YDH_007 | No text annotation | ||
| HL_8YDH_009 | No text annotation | ||
| HL_8YDH_010 | No text annotation | ||
| HL_8YDH_014 | No text annotation | ||
| HL_8YDH_015 | No text annotation | ||
| HL_8YDH_017 | No text annotation | ||
| HL_8YDH_024 | No text annotation | ||
| HL_8YDH_027 | No text annotation | ||
| HL_8YDH_028 | GNRA wlth tandem sheared | ||
| HL_8YDH_029 | No text annotation | ||
| HL_8YDH_034 | No text annotation | ||
| HL_8YDH_035 | No text annotation | ||
| HL_8YDH_036 | No text annotation | ||
| HL_8YDH_037 | No text annotation | ||
| HL_8YDH_039 | No text annotation | ||
| HL_8YDH_040 | No text annotation | ||
| HL_8YDH_042 | No text annotation | ||
| HL_8YDH_043 | No text annotation | ||
| HL_8YDH_046 | No text annotation | ||
| HL_8YDH_050 | No text annotation | ||
| HL_8YDH_054 | No text annotation | ||
| HL_8YDH_057 | No text annotation | ||
| HL_8YDH_060 | No text annotation | ||
| HL_8YDH_063 | No text annotation | ||
| HL_8YDH_064 | No text annotation | ||
| HL_8YDH_065 | No text annotation | ||
| HL_8YDH_066 | UNCG variation | ||
| HL_8YDH_068 | No text annotation | ||
| HL_8YDH_071 | No text annotation | ||
| HL_8YDH_073 | No text annotation | ||
| HL_8YDH_074 | GNRA | ||
| HL_8YDH_075 | No text annotation | ||
| HL_8YDH_076 | No text annotation | ||
| HL_8YDH_077 | No text annotation | ||
| HL_8YDH_079 | No text annotation | ||
| HL_8YDH_080 | No text annotation | ||
| HL_8YDH_081 | GNRA | ||
| HL_8YDH_082 | No text annotation | ||
| HL_8YDH_083 | No text annotation | ||
| HL_8YDH_085 | No text annotation | ||
| HL_8YDH_086 | No text annotation | ||
| HL_8YDH_087 | No text annotation | ||
| HL_8YDH_089 | No text annotation | ||
| HL_8YDH_090 | No text annotation | ||
| HL_8YDH_093 | GNRA | ||
| HL_8YDH_096 | No text annotation | ||
| HL_8YDH_097 | No text annotation | ||
| HL_8YDH_098 | GNRA | ||
| HL_8YDH_099 | T-loop with 3 stacked bulged bases | ||
| HL_8YDH_100 | No text annotation | ||
| HL_8YDH_101 | No text annotation | ||
| HL_8YDH_103 | No text annotation | ||
| HL_8YDH_104 | No text annotation | ||
| HL_8YDH_105 | No text annotation | ||
| HL_8YDH_108 | T-loop with 2 stacked bulged bases | ||
| HL_8YDH_109 | No text annotation | ||
| HL_8YDH_110 | No text annotation | ||
| HL_8YDH_111 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8YDH_001 | 1/1/24:30, 1/1/510:516 | No text annotation | geometric IL_8B0X_065 IL_22311.1 | |
| IL_8YDH_002 | 1/1/36:37, 1/1/442:444 | Single bulged A | geometric IL_7A0S_002 IL_14190.2 | |
| IL_8YDH_005 | 1/1/183:184, 1/1/212:214 | Single stack bend | geometric IL_4WF9_007 IL_15011.2 | |
| IL_8YDH_006 | 1/1/239:245, 1/1/253:258 | No text annotation | geometric IL_8B0X_071 IL_02666.1 | |
| IL_8YDH_011 | 1/1/481:484, 1/1/496:509 | No text annotation | geometric IL_8B0X_075 IL_44923.1 | |
| IL_8YDH_012 | 1/1/536:539, 1/1/554:557 | No text annotation | geometric IL_8B0X_076 IL_58355.2 | |
| IL_8YDH_014 | 1/1/672:674, 1/1/806:808 | No text annotation | geometric IL_8B0X_079 IL_01003.2 | |
| IL_8YDH_015 | 1/1/674:678, 1/1/799:806 | No text annotation | geometric IL_8B0X_080 IL_73855.1 | |
| IL_8YDH_016 | 1/1/697:698, 1/1/763:765 | No text annotation | geometric IL_8B0X_081 IL_14190.2 | |
| IL_8YDH_017 | 1/1/702:703, 1/1/728:730 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_8YDH_018 | 1/1/703:707, 1/1/724:728 | Triple sheared | geometric IL_4WF9_024 IL_15190.2 | |
| IL_8YDH_019 | 1/1/738:740, 1/1/757:758 | No text annotation | geometric IL_8B0X_084 IL_48076.8 | |
| IL_8YDH_020 | 1/1/775:777, 1/1/787:791 | No text annotation | geometric IL_8B0X_085 IL_89509.1 | |
| IL_8YDH_027 | 1/1/864:868, 1/1/909:912 | No text annotation | geometric IL_8B0X_092 IL_16301.1 | |
| IL_8YDH_028 | 1/1/870:872, 1/1/905:907 | No text annotation | geometric IL_8B0X_093 IL_01003.2 | |
| IL_8YDH_031 | 1/1/994:996, 1/1/1159:1160 | No text annotation | geometric IL_8B0X_096 IL_05642.2 | |
| IL_8YDH_032 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | geometric IL_7A0S_033 IL_08938.1 | |
| IL_8YDH_036 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_8B0X_101 IL_50715.4 | |
| IL_8YDH_037 | 1/1/1031:1034, 1/1/1121:1123 | No text annotation | geometric IL_8B0X_102 IL_76400.1 | |
| IL_8YDH_042 | 1/1/1196:1198, 1/1/1247:1250 | No text annotation | geometric IL_8B0X_105 IL_42997.5 | |
| IL_8YDH_044 | 1/1/1208:1215, 1/1/1234:1238 | No text annotation | geometric IL_8B0X_107 IL_90775.2 | |
| IL_8YDH_045 | 1/1/1319:1323, 1/1/1331:1333 | No text annotation | geometric IL_8B0X_110 IL_63596.12 | |
| IL_8YDH_046 | 1/1/1351:1355, 1/1/1376:1380 | No text annotation | geometric IL_8B0X_111 IL_89021.3 | |
| IL_8YDH_047 | 1/1/1357:1361, 1/1/1370:1374 | No text annotation | geometric IL_8B0X_112 IL_05821.1 | |
| IL_8YDH_049 | 1/1/1417:1421, 1/1/1577:1581 | No text annotation | geometric IL_8B0X_114 IL_08938.1 | |
| IL_8YDH_058 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | geometric IL_7A0S_059 IL_12566.5 | |
| IL_8YDH_059 | 1/1/1663:1665, 1/1/1995:1997 | No text annotation | geometric IL_8B0X_124 IL_10432.1 | |
| IL_8YDH_060 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | geometric IL_4WF9_117 IL_80252.1 | |
| IL_8YDH_061 | 1/1/1686:1691, 1/1/1696:1702 | No text annotation | geometric IL_8B0X_127 IL_20700.1 | |
| IL_8YDH_064 | 1/1/1770:1771, 1/1/1980:1982 | No text annotation | geometric IL_8B0X_131 IL_14190.2 | |
| IL_8YDH_065 | 1/1/1798:1804, 1/1/1813:1821 | No text annotation | geometric IL_8B0X_132 IL_17069.6 | |
| IL_8YDH_066 | 1/1/1837:1840, 1/1/1902:1903 | Minor groove platform, major groove intercalation | geometric IL_4V9F_066 IL_55206.1 | |
| IL_8YDH_067 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | geometric IL_4V9F_067 IL_71421.2 | |
| IL_8YDH_068 | 1/1/1846:1849, 1/1/1893:1894 | No text annotation | geometric IL_8B0X_135 IL_73108.2 | |
| IL_8YDH_069 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | ||
| IL_8YDH_071 | 1/1/1933:1945, 1/1/1961:1967 | No text annotation | ||
| IL_8YDH_072 | 1/1/2050:2052, 1/1/2617:2618 | No text annotation | geometric IL_8B0X_139 IL_48076.8 | |
| IL_8YDH_073 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | geometric IL_8B0X_140 IL_80025.1 | |
| IL_8YDH_074 | 1/1/2067:2069, 1/1/2442:2443 | No text annotation | geometric IL_8B0X_182 IL_97561.2 | |
| IL_8YDH_075 | 1/1/2070:2071, 1/1/2438:2441 | No text annotation | geometric IL_8B0X_143 IL_34520.2 | |
| IL_8YDH_076 | 1/1/2081:2083, 1/1/2236:2239 | No text annotation | geometric IL_8B0X_144 IL_87316.1 | |
| IL_8YDH_077 | 1/1/2085:2087, 1/1/2232:2234 | No text annotation | geometric IL_8B0X_145 IL_71625.2 | |
| IL_8YDH_082 | 1/1/2350:2353, 1/1/2364:2367 | No text annotation | geometric IL_8B0X_148 IL_58355.2 | |
| IL_8YDH_083 | 1/1/2401:2403, 1/1/2414:2415 | No text annotation | geometric IL_9AXU_122 IL_97561.2 | |
| IL_8YDH_084 | 1/1/2453:2454, 1/1/2498:2500 | No text annotation | geometric IL_8B0X_183 IL_15011.2 | |
| IL_8YDH_085 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | geometric IL_7EOG_001 IL_48076.8 | |
| IL_8YDH_086 | 1/1/2457:2461, 1/1/2489:2494 | No text annotation | ||
| IL_8YDH_088 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform | geometric IL_4WF9_094 IL_46637.2 | |
| IL_8YDH_089 | 1/1/2510:2512, 1/1/2574:2578 | No text annotation | geometric IL_8B0X_155 IL_68118.2 | |
| IL_8YDH_090 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation | geometric IL_8B0X_156 IL_44609.2 | |
| IL_8YDH_091 | 1/1/2522:2523, 1/1/2540:2543 | No text annotation | geometric IL_8B0X_157 IL_94991.2 | |
| IL_8YDH_092 | 1/1/2591:2592, 1/1/2601:2603 | No text annotation | geometric IL_8GLP_154 IL_14190.2 | |
| IL_8YDH_093 | 1/1/2636:2640, 1/1/2774:2782 | No text annotation | geometric IL_8B0X_160 IL_04638.4 | |
| IL_8YDH_095 | 1/1/2680:2684, 1/1/2725:2727 | No text annotation | geometric IL_8B0X_162 IL_63596.12 | |
| IL_8YDH_097 | 1/1/2695:2696, 1/1/2711:2714 | No text annotation | geometric IL_8B0X_164 IL_44609.2 | |
| IL_8YDH_098 | 1/1/2737:2742, 1/1/2762:2767 | No text annotation | geometric IL_8B0X_165 IL_91079.1 | |
| IL_8YDH_110 | 1/3/47:52, 1/3/359:361 | No text annotation | geometric IL_8B0X_003 IL_32983.2 | |
| IL_8YDH_123 | 1/3/292:293, 1/3/304:308 | C-loop | geometric IL_4LFB_013 IL_06671.1 | |
| IL_8YDH_133 | 1/3/569:575, 1/3/880:881 | No text annotation | geometric IL_8B0X_025 IL_20847.1 | |
| IL_8YDH_134 | 1/3/580:584, 1/3/757:761 | No text annotation | geometric IL_8B0X_026 IL_05821.1 | |
| IL_8YDH_142 | 1/3/684:688, 1/3/699:706 | No text annotation | geometric IL_8B0X_034 IL_71972.1 | |
| IL_8YDH_143 | 1/3/774:778, 1/3/804:805 | No text annotation | geometric IL_8B0X_035 IL_29346.3 | |
| IL_8YDH_144 | 1/3/779:783, 1/3/799:803 | No text annotation | geometric IL_8B0X_036 IL_05821.1 | |
| IL_8YDH_145 | 1/3/887:894, 1/3/905:910 | No text annotation | geometric IL_8B0X_037 IL_84044.1 | |
| IL_8YDH_146 | 1/3/922:923, 1/3/1393:1395 | No text annotation | geometric IL_8B0X_038 IL_14190.2 | |
| IL_8YDH_156 | 1/3/1060:1061, 1/3/1195:1197 | No text annotation | geometric IL_8B0X_048 IL_14190.2 | |
| IL_8YDH_164 | 1/3/1303:1308, 1/3/1329:1334 | No text annotation | geometric IL_8B0X_056 IL_57885.2 | |
| IL_8YDH_165 | 1/3/1399:1401, 1/3/1501:1504 | No text annotation | geometric IL_8B0X_057 IL_18228.1 | |
| IL_8YDH_166 | 1/3/1401:1404, 1/3/1497:1501 | No text annotation | geometric IL_8GLP_275 IL_25873.2 | |
| IL_8YDH_171 | 1/3/1430:1435, 1/3/1466:1470 | No text annotation | geometric IL_8B0X_062 IL_67427.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8YDH_003 | No text annotation | ||
| IL_8YDH_004 | No text annotation | ||
| IL_8YDH_007 | No text annotation | ||
| IL_8YDH_008 | No text annotation | ||
| IL_8YDH_009 | No text annotation | ||
| IL_8YDH_010 | No text annotation | ||
| IL_8YDH_013 | No text annotation | ||
| IL_8YDH_021 | No text annotation | ||
| IL_8YDH_022 | No text annotation | ||
| IL_8YDH_023 | No text annotation | ||
| IL_8YDH_024 | No text annotation | ||
| IL_8YDH_025 | No text annotation | ||
| IL_8YDH_026 | No text annotation | ||
| IL_8YDH_029 | No text annotation | ||
| IL_8YDH_030 | No text annotation | ||
| IL_8YDH_033 | No text annotation | ||
| IL_8YDH_034 | No text annotation | ||
| IL_8YDH_035 | No text annotation | ||
| IL_8YDH_038 | No text annotation | ||
| IL_8YDH_039 | Kink-turn | ||
| IL_8YDH_040 | No text annotation | ||
| IL_8YDH_041 | Major groove platform | ||
| IL_8YDH_043 | No text annotation | ||
| IL_8YDH_048 | No text annotation | ||
| IL_8YDH_050 | No text annotation | ||
| IL_8YDH_051 | No text annotation | ||
| IL_8YDH_052 | Single bulged U | ||
| IL_8YDH_053 | No text annotation | ||
| IL_8YDH_054 | No text annotation | ||
| IL_8YDH_055 | No text annotation | ||
| IL_8YDH_056 | No text annotation | ||
| IL_8YDH_057 | No text annotation | ||
| IL_8YDH_062 | No text annotation | ||
| IL_8YDH_063 | No text annotation | ||
| IL_8YDH_070 | No text annotation | ||
| IL_8YDH_078 | No text annotation | ||
| IL_8YDH_079 | No text annotation | ||
| IL_8YDH_080 | No text annotation | ||
| IL_8YDH_081 | No text annotation | ||
| IL_8YDH_087 | No text annotation | ||
| IL_8YDH_094 | No text annotation | ||
| IL_8YDH_096 | UAA/GAN related, with intercalation | ||
| IL_8YDH_099 | No text annotation | ||
| IL_8YDH_100 | Major groove intercalation | ||
| IL_8YDH_101 | No text annotation | ||
| IL_8YDH_102 | No text annotation | ||
| IL_8YDH_103 | Major groove intercalation | ||
| IL_8YDH_104 | No text annotation | ||
| IL_8YDH_105 | Major groove minor groove platform; mini C-loop | ||
| IL_8YDH_106 | No text annotation | ||
| IL_8YDH_107 | No text annotation | ||
| IL_8YDH_108 | No text annotation | ||
| IL_8YDH_109 | No text annotation | ||
| IL_8YDH_111 | No text annotation | ||
| IL_8YDH_112 | No text annotation | ||
| IL_8YDH_113 | No text annotation | ||
| IL_8YDH_114 | Minor groove platform | ||
| IL_8YDH_115 | No text annotation | ||
| IL_8YDH_116 | No text annotation | ||
| IL_8YDH_117 | No text annotation | ||
| IL_8YDH_118 | Isolated cWH basepair | ||
| IL_8YDH_119 | No text annotation | ||
| IL_8YDH_120 | No text annotation | ||
| IL_8YDH_121 | No text annotation | ||
| IL_8YDH_122 | No text annotation | ||
| IL_8YDH_124 | No text annotation | ||
| IL_8YDH_125 | No text annotation | ||
| IL_8YDH_126 | No text annotation | ||
| IL_8YDH_127 | No text annotation | ||
| IL_8YDH_128 | No text annotation | ||
| IL_8YDH_129 | No text annotation | ||
| IL_8YDH_130 | No text annotation | ||
| IL_8YDH_131 | SSU/LSU pseudoknot | ||
| IL_8YDH_132 | No text annotation | ||
| IL_8YDH_135 | No text annotation | ||
| IL_8YDH_136 | No text annotation | ||
| IL_8YDH_137 | No text annotation | ||
| IL_8YDH_138 | No text annotation | ||
| IL_8YDH_139 | No text annotation | ||
| IL_8YDH_140 | No text annotation | ||
| IL_8YDH_141 | No text annotation | ||
| IL_8YDH_147 | No text annotation | ||
| IL_8YDH_148 | Minor groove platform | ||
| IL_8YDH_149 | Minor groove platform | ||
| IL_8YDH_150 | No text annotation | ||
| IL_8YDH_151 | No text annotation | ||
| IL_8YDH_152 | No text annotation | ||
| IL_8YDH_153 | No text annotation | ||
| IL_8YDH_154 | Isolated cWS basepair | ||
| IL_8YDH_155 | No text annotation | ||
| IL_8YDH_157 | No text annotation | ||
| IL_8YDH_158 | No text annotation | ||
| IL_8YDH_159 | No text annotation | ||
| IL_8YDH_160 | No text annotation | ||
| IL_8YDH_161 | No text annotation | ||
| IL_8YDH_162 | No text annotation | ||
| IL_8YDH_163 | No text annotation | ||
| IL_8YDH_167 | No text annotation | ||
| IL_8YDH_168 | No text annotation | ||
| IL_8YDH_169 | No text annotation | ||
| IL_8YDH_170 | No text annotation | ||
| IL_8YDH_172 | Single bulged A | ||
| IL_8YDH_173 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8YDH_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | geometric J3_8B0X_014 J3_68715.1 | |
| J3_8YDH_002 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation | geometric J3_8B0X_032 J3_17917.1 | |
| J3_8YDH_003 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | geometric J3_8B0X_033 J3_07616.1 | |
| J3_8YDH_004 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | geometric J3_8B0X_015 J3_01004.1 | |
| J3_8YDH_006 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | geometric J3_9E6Q_007 J3_46658.1 | |
| J3_8YDH_007 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | geometric J3_4WF9_003 J3_69816.1 | |
| J3_8YDH_009 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | ||
| J3_8YDH_010 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | geometric J3_8B0X_019 J3_47341.1 | |
| J3_8YDH_012 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | geometric J3_8B0X_035 J3_34864.3 | |
| J3_8YDH_013 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | No text annotation | geometric J3_8B0X_021 J3_17460.1 | |
| J3_8YDH_014 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | geometric J3_9E6Q_015 J3_04772.1 | |
| J3_8YDH_015 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | ||
| J3_8YDH_016 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | ||
| J3_8YDH_021 | 1/3/46:52, 1/3/359:367, 1/3/393:395 | No text annotation | geometric J3_8B0X_027 J3_63856.1 | |
| J3_8YDH_022 | 1/3/586:588, 1/3/651:654, 1/3/754:755 | No text annotation | geometric J3_8B0X_002 J3_01633.1 | |
| J3_8YDH_023 | 1/3/586:588, 1/3/651:655, 1/3/751:755 | No text annotation | geometric J3_8B0X_028 J3_17385.5 | |
| J3_8YDH_025 | 1/3/826:829, 1/3/857:861, 1/3/868:874 | No text annotation | ||
| J3_8YDH_027 | 1/3/943:946, 1/3/1235:1237, 1/3/1337:1340 | No text annotation | geometric J3_8B0X_006 J3_44359.1 | |
| J3_8YDH_028 | 1/3/955:962, 1/3/973:984, 1/3/1221:1225 | No text annotation | geometric J3_4LFB_004 J3_88451.1 | |
| J3_8YDH_029 | 1/3/990:993, 1/3/1045:1047, 1/3/1210:1215 | No text annotation | geometric J3_4LFB_005 J3_84394.1 | |
| J3_8YDH_030 | 1/3/990:997, 1/3/1044:1047, 1/3/1210:1215 | No text annotation | geometric J3_8B0X_029 J3_28881.1 | |
| J3_8YDH_031 | 1/3/1063:1068, 1/3/1107:1113, 1/3/1187:1193 | No text annotation | geometric J3_8B0X_010 J3_01343.1 | |
| J3_8YDH_032 | 1/3/1073:1074, 1/3/1083:1086, 1/3/1099:1102 | No text annotation | geometric J3_8B0X_030 J3_11018.1 | |
| J4_8YDH_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | ||
| J4_8YDH_002 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | ||
| J4_8YDH_003 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | ||
| J4_8YDH_004 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | ||
| J4_8YDH_006 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | ||
| J4_8YDH_007 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | ||
| J4_8YDH_008 | 1/1/2285:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation | ||
| J4_8YDH_010 | 1/3/115:122, 1/3/239:240, 1/3/286:289, 1/3/311:312 | No text annotation | ||
| J4_8YDH_012 | 1/3/575:577, 1/3/764:769, 1/3/810:821, 1/3/879:880 | No text annotation | ||
| J5_8YDH_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | ||
| J5_8YDH_002 | 1/1/531:533, 1/1/560:566, 1/1/575:579, 1/1/1261:1269, 1/1/2011:2018 | No text annotation | ||
| J5_8YDH_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | ||
| J5_8YDH_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | ||
| J5_8YDH_005 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation | ||
| J5_8YDH_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | ||
| J5_8YDH_009 | 1/3/58:61, 1/3/106:113, 1/3/314:316, 1/3/337:339, 1/3/350:354 | No text annotation | ||
| J6_8YDH_001 | 1/1/45:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J6_8YDH_002 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation | ||
| J7_8YDH_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_8YDH_002 | 1/1/817:822, 1/1/835:838, 1/1/940:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8YDH_005 | No text annotation | ||
| J3_8YDH_008 | No text annotation | ||
| J3_8YDH_011 | No text annotation | ||
| J3_8YDH_017 | No text annotation | ||
| J3_8YDH_018 | No text annotation | ||
| J3_8YDH_019 | No text annotation | ||
| J3_8YDH_020 | No text annotation | ||
| J3_8YDH_024 | No text annotation | ||
| J3_8YDH_026 | No text annotation | ||
| J3_8YDH_033 | No text annotation | ||
| J3_8YDH_034 | No text annotation | ||
| J3_8YDH_035 | No text annotation | ||
| J4_8YDH_005 | No text annotation | ||
| J4_8YDH_009 | No text annotation | ||
| J4_8YDH_011 | No text annotation | ||
| J4_8YDH_013 | No text annotation | ||
| J4_8YDH_014 | No text annotation | ||
| J4_8YDH_015 | No text annotation | ||
| J5_8YDH_007 | No text annotation | ||
| J5_8YDH_008 | No text annotation |
Coloring options: