HL_8YDH_051

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

8YDH|1|1|A|2211, 8YDH|1|1|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDH_051 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.1705

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8YDH|1|1|G|2209
8YDH|1|1|U|2210
8YDH|1|1|A|2211
8YDH|1|1|A|2212
8YDH|1|1|U|2213
8YDH|1|1|C|2214
8YDH|1|1|C|2215

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2