HL_8YDH_095

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8YDH|1|3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDH_095 not in the Motif Atlas

Geometric match to HL_8B0X_022

Geometric discrepancy: 0.0727

The information below is about HL_8B0X_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8YDH|1|3|G|1089
8YDH|1|3|U|1090
8YDH|1|3|U|1091
8YDH|1|3|A|1092
8YDH|1|3|A|1093
8YDH|1|3|G|1094
8YDH|1|3|U|1095
8YDH|1|3|C|1096

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain L

30S ribosomal protein S7

Chain Z

30S ribosomal protein S21