HL_8YDI_001

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

8YDI|1|1|G|60, 8YDI|1|1|C|61, 8YDI|1|1|U|62, 8YDI|1|1|A|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_001 not in the Motif Atlas

Geometric match to HL_8KEB_002

Geometric discrepancy: 0.271

The information below is about HL_8KEB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8YDI|1|1|U|59
8YDI|1|1|G|60
8YDI|1|1|C|61
8YDI|1|1|U|62
8YDI|1|1|A|63
8YDI|1|1|A|64
8YDI|1|1|U|65
8YDI|1|1|C|66
8YDI|1|1|U|67
8YDI|1|1|G|68

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23

Chain y

50S ribosomal protein L29