HL_8YDI_005
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_005 not in the Motif Atlas
- Geometric match to HL_8B0X_037
- Geometric discrepancy: 0.1913
- The information below is about HL_8B0X_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50765.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8YDI|1|1|U|158
8YDI|1|1|G|159
8YDI|1|1|A|160
8YDI|1|1|A|161
8YDI|1|1|U|162
8YDI|1|1|C|163
8YDI|1|1|C|164
8YDI|1|1|A|165
8YDI|1|1|U|166
8YDI|1|1|A|167
8YDI|1|1|G|168
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain x
- 50S ribosomal protein L28
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