HL_8YDI_012

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8YDI|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_012 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.0889

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8YDI|1|1|G|410
8YDI|1|1|G|411
8YDI|1|1|A|412
8YDI|1|1|C|413
8YDI|1|1|C|414
8YDI|1|1|A|415
8YDI|1|1|U|416
8YDI|1|1|C|417

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15