HL_8YDI_047
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 8YDI|1|1|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_047 not in the Motif Atlas
- Geometric match to HL_9DFE_046
- Geometric discrepancy: 0.1529
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8YDI|1|1|G|1910
8YDI|1|1|U|1911
8YDI|1|1|A|1912
8YDI|1|1|A|1913
8YDI|1|1|C|1914
8YDI|1|1|U|1915
8YDI|1|1|A|1916
8YDI|1|1|U|1917
8YDI|1|1|A|1918
8YDI|1|1|A|1919
8YDI|1|1|C|1920
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain h
- viomycin
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