HL_8YDI_054

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDI_054 not in the Motif Atlas

Geometric match to HL_9E6Q_072

Geometric discrepancy: 0.173

The information below is about HL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8YDI|1|1|G|2304
8YDI|1|1|U|2305
8YDI|1|1|C|2306
8YDI|1|1|G|2307
8YDI|1|1|G|2308
8YDI|1|1|A|2309
8YDI|1|1|C|2310
8YDI|1|1|A|2311
8YDI|1|1|U|2312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L5