HL_8YDI_100
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8YDI|1|3|U|1364
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDI_100 not in the Motif Atlas
- Geometric match to HL_8B0X_027
- Geometric discrepancy: 0.101
- The information below is about HL_8B0X_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YDI|1|3|G|1356
8YDI|1|3|A|1357
8YDI|1|3|U|1358
8YDI|1|3|C|1359
8YDI|1|3|A|1360
8YDI|1|3|G|1361
8YDI|1|3|A|1362
8YDI|1|3|A|1363
8YDI|1|3|U|1364
8YDI|1|3|G|1365
8YDI|1|3|C|1366
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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