HL_8YDJ_010

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8YDJ|1|1|G|329, 8YDJ|1|1|A|330, 8YDJ|1|1|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDJ_010 not in the Motif Atlas

Geometric match to HL_9E6Q_012

Geometric discrepancy: 0.127

The information below is about HL_9E6Q_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

8YDJ|1|1|G|327
8YDJ|1|1|U|328
8YDJ|1|1|G|329
8YDJ|1|1|A|330
8YDJ|1|1|C|331
8YDJ|1|1|A|332
8YDJ|1|1|G|333
8YDJ|1|1|C|334
8YDJ|1|1|C|335

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24